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Journal Articles

Abstract 4966: Machine learning and large language model approach to pancancer data elements

Andrew Niederhausern, Nadia S. Bahadur, Gary Wallace, Gilan E. Saadawi, John Philip
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 4966.
https://doi.org/10.1158/1538-7445.AM2024-4966
Published: 22 March 2024
View article titled, Abstract 4966: Machine learning and large language model approach to pancancer data elements
Journal Articles

Abstract 4965: Detection of status of cancer in radiology notes using artificial intelligence

Ankur Arya, Andrew Niederhausern, Nadia S. Bahadur, Neil J. Shah, Chelsea Nichols, Avijit Chatterjee, John Philip
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 4965.
https://doi.org/10.1158/1538-7445.AM2024-4965
Published: 22 March 2024
View article titled, Abstract 4965: Detection of status of cancer in radiology notes using artificial intelligence
Journal Articles

Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal

Ino de Bruijn, Ritika Kundra, Brooke Mastrogiacomo, Thinh Ngoc Tran, Luke Sikina, Tali Mazor, Xiang Li, Angelica Ochoa, Gaofei Zhao, Bryan Lai, Adam Abeshouse, Diana Baiceanu, Ersin Ciftci, Ugur Dogrusoz, Andrew Dufilie, Ziya Erkoc, Elena Garcia Lara, Zhaoyuan Fu, Benjamin Gross, Charles Haynes, Allison Heath, David Higgins, Prasanna Jagannathan, Karthik Kalletla, Priti Kumari, James Lindsay, Aaron Lisman, Bas Leenknegt, Pieter Lukasse, Divya Madela, Ramyasree Madupuri, Pim van Nierop, Oleguer Plantalech, Joyce Quach, Adam C. Resnick, Sander Y.A. Rodenburg, Baby A. Satravada, Fedde Schaeffer, Robert Sheridan, Jessica Singh, Rajat Sirohi, Selcuk Onur Sumer, Sjoerd van Hagen, Avery Wang, Manda Wilson, Hongxin Zhang, Kelsey Zhu, Nicole Rusk, Samantha Brown, Jessica A. Lavery, Katherine S. Panageas, Julia E. Rudolph, Michele L. LeNoue-Newton, Jeremy L. Warner, Xindi Guo, Haley Hunter-Zinck, Thomas V. Yu, Shirin Pilai, Chelsea Nichols, Stuart M. Gardos, John Philip, AACR Project GENIE BPC Core Team, AACR Project GENIE Consortium, Kenneth L. Kehl, Gregory J. Riely, Deborah Schrag, Jocelyn Lee, Michael V. Fiandalo, Shawn M. Sweeney, Trevor J. Pugh, Chris Sander, Ethan Cerami, Jianjiong Gao, Nikolaus Schultz
Journal: Cancer Research
Cancer Res (2023) 83 (23): 3861–3867.
https://doi.org/10.1158/0008-5472.CAN-23-0816
Published: 01 December 2023
View article titled, Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal
Open the PDF for Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal in another window
Includes: Supplementary data
Journal Articles

Abstract 2870: Genetic mechanisms of primary chemotherapy resistance in pediatric acute myeloid leukemia

Nicole McNeer, John Philip, Heather Geiger, Rhonda E. Ries, Vincent-Philippe Lavallee, Michael Walsh, Minita Shah, Kanika Arora, Anne-Katrin Emde, Nicolas Robine, Todd A. Alonzo, E. Anders Kolb, Alan S. Gamis, Malcom Smith, Daniela Se Gerhard, Jaime Guidry-Auvil, Soheil Meshinchi, Alex Kentsis
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 2870.
https://doi.org/10.1158/1538-7445.AM2019-2870
Published: 01 July 2019
View article titled, Abstract 2870: Genetic mechanisms of primary chemotherapy resistance in pediatric acute myeloid leukemia
Journal Articles

Abstract LB-304: Oncologic therapy for solid tumors alters the risk of clonal hematopoiesis

Kelly Bolton, Ryan Ptashkin, Lior Braunstein, Teng Gao, Sean M. Devlin, Daniel Kelly, Catherine Coombs, Minal Patel, Matahi Moarii, Elsa Bernard, Antonin Berthon, Laura Boucai, Dominik Glodzik, Axel Martin, Zsofia Stadler, Michael Walsh, Diana Mandelker, Akshar Patel, Jessica Schulman, Gunes Gundem, Aijazuddin Syed, Maria Arcila, David B. Solit, Mark E. Robson, Marc Ladanyi, Choonsik Lee, John Philip, Dean Bajorin, Montserrat Garcia-Closas, Stuart Gardos, David Hyman, Martin Tallman, Mariko Yabe, Kenneth Offit, Howard Scher, Virginia Klimek, Luis Diaz, Nilanjan Chatterjee, Michael F. Berger, Lindsay Morton, Ross Levine, Ahmet Zehir, Elli Papaemmanuil
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): LB-304.
https://doi.org/10.1158/1538-7445.AM2019-LB-304
Published: 01 July 2019
View article titled, Abstract LB-304: Oncologic therapy for solid tumors alters the risk of clonal hematopoiesis
Journal Articles

Abstract 2493: Identification of the mutant p53-PARP-MCM chromatin axis as a triple negative breast cancer replication stress target

Wei-Gang Qiu, Alla Polotskaia, Gu Xiao, Lia Di, Yuhan Zhao, Wenwei Hu, John Philip, Ronald Hendrickson, Jill Bargonetti
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 2493.
https://doi.org/10.1158/1538-7445.AM2017-2493
Published: 01 July 2017
View article titled, Abstract 2493: Identification of the mutant p53-PARP-MCM chromatin axis as a triple negative breast cancer replication stress target
Journal Articles

Abstract 4975: A small molecule pan Id protein antagonist shows strong antitumor activity

Paulina M. Wojnarowicz, Bina Desai, Yvette Chin, Sang Bae Lee, Marta Garcia-Cao, Ouathek Ouerfelli, Guangli Yang, Sijia Xu, Yehuda Goldgur, Meredith A. Miller, Jaideep Chaudhary, William A. Garland, Steven K. Albanese, Rajesh Soni, John Philip, Larry Norton, Neal Rosen, Ronald C. Hendrickson, Xi Kathy Zhou, Antonio Iavarone, Andrew J. Dannenberg, John D. Chodera, Nikola Pavletich, Anna Lasorella, Robert Benezra
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 4975.
https://doi.org/10.1158/1538-7445.AM2017-4975
Published: 01 July 2017
View article titled, Abstract 4975: A small molecule pan Id protein antagonist shows strong antitumor activity
Journal Articles

Abstract 3684: Proteome-wide triple negative breast cancer mutant p53 association index identifies chromatin unwinding for precision therapeutics

Wei-Gang Qiu, Alla Polotskaia, Gu Xiao, Lia Di, John Philip, Ronald C. Hendrikson, Jill Bargonetti
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 3684.
https://doi.org/10.1158/1538-7445.AM2016-3684
Published: 15 July 2016
View article titled, Abstract 3684: Proteome-wide triple negative breast cancer mutant p53 association index identifies chromatin unwinding for precision therapeutics
Journal Articles

Tumor-specific serum peptidome patterns.

Paul Tempst, Josep Villanueva, David R. Shaffer, Andrew Martorella, Mark E. Robson, Kevin Lawlor, John Philip, Martin Fleisher, Hans Lilja, Eric C. Holland, Richard J. Robbins, Carlos Cordon-Cardo, Howard I. Scher
Journal: Cancer Research
Cancer Res (2006) 66 (8_Supplement): 1358.
Published: 15 April 2006
View article titled, Tumor-specific serum peptidome patterns.