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John K. Wiencke
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Journal Articles

Abstract 3497: Glioma Immune Microenvironment Composition Calculator (GIMiCC): A method of estimating the proportions of eighteen key cell types from human brain tissue assayed using Illumina DNA methylation microarray technology

Steven C. Pike, John K. Wiencke, Ze Zhang, Annette M. Molinaro, Devin C. Koestler, Brock C. Christensen, Karl T. Kelsey, Lucas A. Salas
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 3497.
https://doi.org/10.1158/1538-7445.AM2024-3497
Published: 22 March 2024
View article titled, Abstract 3497: Glioma Immune Microenvironment Composition Calculator (GIMiCC): A method of estimating the proportions of eighteen key cell types from human brain tissue assayed using Illumina DNA methylation microarray technology
Journal Articles

Abstract 6675: Integration of associations of immune profiles in peripheral blood and tumor microenvironment with bladder cancer outcomes

Ji-Qing Chen, Lucas A. Salas, John K. Wiencke, Devin C. Koestler, Annette M. Molinaro, Angeline S. Andrew, John D. Seigne, Margaret R. Karagas, Karl T. Kelsey, Brock C. Christensen
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 6675.
https://doi.org/10.1158/1538-7445.AM2023-6675
Published: 04 April 2023
View article titled, Abstract 6675: Integration of associations of immune profiles in peripheral blood and tumor microenvironment with bladder cancer outcomes
Journal Articles

Abstract 1193: Adult diffuse glioma GWAS by molecular subtype identifies variants in D2HGDH, FAM20C and GMEB2

Jeanette E. Eckel-Passow, Kristen L. Drucker, Thomas M. Kollmeyer, Matthew L. Kosel, Paul A. Decker, Annette M. Molinaro, Terri Rice, Corrine E. Praska, Lauren E. Clark, Alissa A. Caron, Alexej Abyzov, Anthony Batzler, Jun S. Song, Melike Pekmezci, Helen M. Hansen, Lucie S. McCoy, Paige M. Bracci, Joseph Wiemels, John K. Wiencke, Stephen Francis, Terence C. Burns, Caterina Giannini, Daniel H. Lachance, Margaret Wrensch, Robert B. Jenkins
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 1193.
https://doi.org/10.1158/1538-7445.AM2020-1193
Published: 15 August 2020
View article titled, Abstract 1193: Adult diffuse glioma GWAS by molecular subtype identifies variants in D2HGDH, FAM20C and GMEB2
Journal Articles

Abstract 830: DNA methylation cytometry reveals cancer survival related to cell composition

Lucas A. Salas, Karl T. Kelsey, Devin C. Koestler, John K. Wiencke, Brock C. Christensen
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 830.
https://doi.org/10.1158/1538-7445.AM2019-830
Published: 01 July 2019
View article titled, Abstract 830: DNA methylation cytometry reveals cancer survival related to cell composition
Journal Articles

Abstract 5052: Immune profiles in the San Francisco Adult Glioma Study using Immunomethylomics

John K. Wiencke, Annette Molinaro, Warrier Gayathri, Jennifer Clarke, Jennie Taylor, Devin Koestler, Joe Wiemels, Helen Hanson, Lee Sean, Terri Rice, Lucie McCoy, Lucas Salas, Wrensch Margaret, Brock Christensen, Karl T. Kelsey
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 5052.
https://doi.org/10.1158/1538-7445.AM2019-5052
Published: 01 July 2019
View article titled, Abstract 5052: Immune profiles in the San Francisco Adult Glioma Study using Immunomethylomics
Journal Articles

Abstract 233: Evaluating glioma risk associated with extent of European admixture in African-Americans and Latinos

Quinn T. Ostrom, Kathleen M. Egan, L. Burt Nabors, Travis Gerke, Reid C. Thompson, Jeffrey J. Olson, Renato LaRocca, Sajeel Chowdhary, Jeanette E. Eckel-Passow, Georgina Armstrong, John K. Wiencke, Christopher I. Amos, Jonine L. Bernstein, Elizabeth B. Claus, Dora Il'yasova, Christoffer Johansen, Daniel H. Lachance, Rose Lai, Ryan T. Merrell, Sara H. Olson, Siegal Sadetzki, Joellen Schildkraut, Sanjay Shete, Richard S. Houlston, Robert B. Jenkins, Beatrice Melin, Melissa L. Bondy, Jill S. Barnholtz-Sloan
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 233.
https://doi.org/10.1158/1538-7445.AM2018-233
Published: 01 July 2018
View article titled, Abstract 233: Evaluating glioma risk associated with extent of European admixture in African-Americans and Latinos
Journal Articles

Abstract 2259: Evaluation of polymorphisms in myeloid-associated genes and glioma survival

Daniel I. Jacobs, Yanhong Liu, Konrad Gabrusiewicz, Spiridon Tsavachidis, E. Susan Amirian, Georgina N. Armstrong, Renke Zhou, Jun Wei, Cristina Ivan, George Calin, Michael Scheurer, Anna Dahlin, Terri Rice, Paige M. Bracci, Helen M. Hansen, John K. Wiencke, Margaret R. Wrensch, Beatrice Melin, Amy B. Heimberger, Melissa L. Bondy
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 2259.
https://doi.org/10.1158/1538-7445.AM2017-2259
Published: 01 July 2017
View article titled, Abstract 2259: Evaluation of polymorphisms in myeloid-associated genes and glioma survival
Journal Articles

Abstract B12: GABP selectively binds and activates the mutant TERT promoter across multiple cancer types

Robert J.A Bell, H. Tomas Rube, Alex Kreig, Andrew Mancini, Shaun F. Fouse, Raman P. Nagarajan, Serah Choi, Chibo Hong, Daniel He, Melike Pekmezci, John K. Wiencke, Margaret R. Wrensch, Susan M. Chang, Kyle M. Walsh, Sua Myong, Jun S. Song, Joseph F. Costello
Journal: Cancer Research
Cancer Res (2015) 75 (23_Supplement): B12.
https://doi.org/10.1158/1538-7445.BRAIN15-B12
Published: 09 December 2015
View article titled, Abstract B12: GABP selectively binds and activates the mutant TERT promoter across multiple cancer types
Journal Articles

A Heritable Missense Polymorphism in CDKN2A Confers Strong Risk of Childhood Acute Lymphoblastic Leukemia and Is Preferentially Selected during Clonal Evolution

Kyle M. Walsh, Adam J. de Smith, Helen M. Hansen, Ivan V. Smirnov, Semira Gonseth, Alyson A. Endicott, Jianqiao Xiao, Terri Rice, Cecilia H. Fu, Lucie S. McCoy, Daniel H. Lachance, Jeanette E. Eckel-Passow, John K. Wiencke, Robert B. Jenkins, Margaret R. Wrensch, Xiaomei Ma, Catherine Metayer, Joseph L. Wiemels
Journal: Cancer Research
Cancer Res (2015) 75 (22): 4884–4894.
https://doi.org/10.1158/0008-5472.CAN-15-1105
Published: 15 November 2015
View article titled, A Heritable Missense Polymorphism in <em>CDKN2A</em> Confers Strong Risk of Childhood Acute Lymphoblastic Leukemia and Is Preferentially Selected during Clonal Evolution
Open the PDF for A Heritable Missense Polymorphism in <em>CDKN2A</em> Confers Strong Risk of Childhood Acute Lymphoblastic Leukemia and Is Preferentially Selected during Clonal Evolution in another window
Includes: Supplementary data
Journal Articles

Abstract 4127: A prospective study of breast cancer prognosis in Kaiser Permanente Northern California: Cohort description and initial findings from the Pathways Study

Lawrence H. Kushi, Marilyn L. Kwan, Isaac J. Ergas, Cecile A. Laurent, Julie R. Munneke, Janise M. Roh, Heather Greenlee, Chi-Chen Hong, Theresa H. Keegan, Dawn L. Hershman, Susan E. Kutner, Marion M. Lee, Jeanne Mandelblatt, Alfred I. Neugut, Peggy Reynolds, Salma Shariff-Marco, Li Tang, Song Yao, Janice Barlow, Scarlett Lin Gomez, John K. Wiencke, Christine B. Ambrosone
Journal: Cancer Research
Cancer Res (2014) 74 (19_Supplement): 4127.
https://doi.org/10.1158/1538-7445.AM2014-4127
Published: 01 October 2014
View article titled, Abstract 4127: A prospective study of breast cancer prognosis in Kaiser Permanente Northern California: Cohort description and initial findings from the Pathways Study
Journal Articles

Abstract 4240: A novel approach to adjust for immune cell distribution in blood-based epigenome-wide association studies of cancer.

Scott M. Langevin, E. A. Houseman, William P. Accomando, Devin C. Koestler, Brock C. Christensen, Heather H. Nelson, Margaret R. Karagas, Carmen J. Marsit, John K. Wiencke, Karl T. Kelsey
Journal: Cancer Research
Cancer Res (2013) 73 (8_Supplement): 4240.
https://doi.org/10.1158/1538-7445.AM2013-4240
Published: 15 April 2013
View article titled, Abstract 4240: A novel approach to adjust for immune cell distribution in blood-based epigenome-wide association studies of cancer.
Journal Articles

Abstract 5022: Immune biology drives cancer specific methylation profiles in blood

Devin C. Koestler, Carmen J. Marsit, Brock C. Christensen, William Accomando, Scott M. Langevin, Eugene A. Houseman, Heather H. Nelson, Margaret R. Karagas, John K. Wiencke, Karl T. Kelsey
Journal: Cancer Research
Cancer Res (2012) 72 (8_Supplement): 5022.
https://doi.org/10.1158/1538-7445.AM2012-5022
Published: 15 April 2012
View article titled, Abstract 5022: Immune biology drives cancer specific methylation profiles in blood
Journal Articles

Abstract LB-374: A novel method for the detection of circulating NK cells in archived blood reveals a decrease in NK cells in head and neck squamous cell carcinoma

William P. Accomando, John K. Wiencke, E. Andres Houseman, Rondi Butler, Shichun Zheng, Heather H. Nelson, Karl T. Kelsey
Journal: Cancer Research
Cancer Res (2012) 72 (8_Supplement): LB-374.
https://doi.org/10.1158/1538-7445.AM2012-LB-374
Published: 15 April 2012
View article titled, Abstract LB-374: A novel method for the detection of circulating NK cells in archived blood reveals a decrease in NK cells in head and neck squamous cell carcinoma
Journal Articles

Abstract 878: DNA methylation, isocitrate dehydrogenase mutation, and survival in glioma

Brock C. Christensen, Ashley A. Smith, Shichun Zheng, Devin C. Koestler, E. Andres Houseman, Carmen J. Marsit, Joseph L. Wiemels, Heather H. Nelson, Margaret R. Karagas, Margaret R. Wrensch, Karl T. Kelsey, John K. Wiencke
Journal: Cancer Research
Cancer Res (2011) 71 (8_Supplement): 878.
https://doi.org/10.1158/1538-7445.AM2011-878
Published: 15 April 2011
View article titled, Abstract 878: DNA methylation, isocitrate dehydrogenase mutation, and survival in glioma
Journal Articles

Circulating Levels of the Innate and Humoral Immune Regulators CD14 and CD23 Are Associated with Adult Glioma

Mi Zhou, Joseph L. Wiemels, Paige M. Bracci, Margaret R. Wrensch, Lucie S. Mccoy, Terri Rice, Jennette D. Sison, Joseph S. Patoka, John K. Wiencke
Journal: Cancer Research
Cancer Res (2010) 70 (19): 7534–7542.
https://doi.org/10.1158/0008-5472.CAN-10-0815
Published: 29 September 2010
View article titled, Circulating Levels of the Innate and Humoral Immune Regulators CD14 and CD23 Are Associated with Adult Glioma
Open the PDF for Circulating Levels of the Innate and Humoral Immune Regulators CD14 and CD23 Are Associated with Adult Glioma in another window
Includes: Supplementary data
Journal Articles

Integrated Profiling Reveals a Global Correlation between Epigenetic and Genetic Alterations in Mesothelioma

Brock C. Christensen, E. Andres Houseman, Graham M. Poage, John J. Godleski, Raphael Bueno, David J. Sugarbaker, John K. Wiencke, Heather H. Nelson, Carmen J. Marsit, Karl T. Kelsey
Journal: Cancer Research
Cancer Res (2010) 70 (14): 5686–5694.
https://doi.org/10.1158/0008-5472.CAN-10-0190
Published: 14 July 2010
View article titled, Integrated Profiling Reveals a Global Correlation between Epigenetic and Genetic Alterations in Mesothelioma
Open the PDF for Integrated Profiling Reveals a Global Correlation between Epigenetic and Genetic Alterations in Mesothelioma in another window
Includes: Supplementary data
Journal Articles

Abstract 2007: Concurrent gene promoter hypermethylation and allele loss occurs infrequently in head and neck squamous cell carcinomas

Graham M. Poage, Brock C. Christensen, E. Andres Houseman, Michael D. McClean, John K. Wiencke, Marshall R. Posner, John R. Clark, Heather H. Nelson, Carmen J. Marsit, Karl T. Kelsey
Journal: Cancer Research
Cancer Res (2010) 70 (8_Supplement): 2007.
https://doi.org/10.1158/1538-7445.AM10-2007
Published: 15 April 2010
View article titled, Abstract 2007: Concurrent gene promoter hypermethylation and allele loss occurs infrequently in head and neck squamous cell carcinomas
Journal Articles

Abstract 4806: Breast carcinoma DNA methylation profiles are associated with tumor size, alcohol intake, and folate intake

Brock C. Christensen, Karl T. Kelsey, E. Andres Houseman, Carmen J. Marsit, Shichun Zheng, Margaret R. Wrensch, Joseph L. Wiemels, Heather H. Nelson, Margaret R. Karagas, Lawrence H. Kushi, Marilyn L. Kwan, John K. Wiencke
Journal: Cancer Research
Cancer Res (2010) 70 (8_Supplement): 4806.
https://doi.org/10.1158/1538-7445.AM10-4806
Published: 15 April 2010
View article titled, Abstract 4806: Breast carcinoma DNA methylation profiles are associated with tumor size, alcohol intake, and folate intake
Journal Articles

Differentiation of Lung Adenocarcinoma, Pleural Mesothelioma, and Nonmalignant Pulmonary Tissues Using DNA Methylation Profiles

Brock C. Christensen, Carmen J. Marsit, E. Andres Houseman, John J. Godleski, Jennifer L. Longacker, Shichun Zheng, Ru-Fang Yeh, Margaret R. Wrensch, Joseph L. Wiemels, Margaret R. Karagas, Raphael Bueno, David J. Sugarbaker, Heather H. Nelson, John K. Wiencke, Karl T. Kelsey
Journal: Cancer Research
Cancer Res (2009) 69 (15): 6315–6321.
https://doi.org/10.1158/0008-5472.CAN-09-1073
Published: 29 July 2009
View article titled, Differentiation of Lung Adenocarcinoma, Pleural Mesothelioma, and Nonmalignant Pulmonary Tissues Using DNA Methylation Profiles
Open the PDF for Differentiation of Lung Adenocarcinoma, Pleural Mesothelioma, and Nonmalignant Pulmonary Tissues Using DNA Methylation Profiles in another window
Includes: Supplementary data
Journal Articles

CYP1A1/2 Haplotypes and Lung Cancer and Assessment of Confounding by Population Stratification

Melinda C. Aldrich, Steve Selvin, Helen M. Hansen, Lisa F. Barcellos, Margaret R. Wrensch, Jennette D. Sison, Karl T. Kelsey, Patricia A. Buffler, Charles P. Quesenberry, Jr., Michael F. Seldin, John K. Wiencke
Journal: Cancer Research
Cancer Res (2009) 69 (6): 2340–2348.
https://doi.org/10.1158/0008-5472.CAN-08-2576
Published: 17 March 2009
View article titled, <em>CYP1A1/2</em> Haplotypes and Lung Cancer and Assessment of Confounding by Population Stratification
Open the PDF for <em>CYP1A1/2</em> Haplotypes and Lung Cancer and Assessment of Confounding by Population Stratification in another window
Includes: Supplementary data