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John D. Carpten
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Journal Articles

Abstract 4343: Revealing ovarian cancer copy number variation in single cells

Yuxin Jin, Rania Bassiouni, Lee D. Gibbs, Jing Qian, Solomon Rotimi, Michelle G. Webb, Seeta Rajpara, David W. Craig, Lynda D. Roman, John D. Carpten
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 4343.
https://doi.org/10.1158/1538-7445.AM2024-4343
Published: 22 March 2024
View article titled, Abstract 4343: Revealing ovarian cancer copy number variation in single cells
Journal Articles

Abstract 5479: Spatially resolved molecular features in the tumor-immune microenvironment of germline BRCA1/2 mutated versus BRCA wild type high grade serous ovarian cancers

Jing Qian, Lynda D. Roman, Rania Bassiouni, Seeta Rajpara, Monica Neuman, Varun Khetan, David W. Craig, Joseph W. Carlson, John D. Carpten
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 5479.
https://doi.org/10.1158/1538-7445.AM2024-5479
Published: 22 March 2024
View article titled, Abstract 5479: Spatially resolved molecular features in the tumor-immune microenvironment of germline BRCA1/2 mutated versus BRCA wild type high grade serous ovarian cancers
Journal Articles

Abstract 3932: Multi-omics characterization of molecular features and global-local genomic ancestry analysis of colorectal cancer in Hispanic-Latinos

Enrique I. Velazquez Villarreal, Seeta Rajpara, Yuxin Jin, Mackenzie Postel, Brigette Waldrup, Flemming Wu, Donna Loza, Heinz-Josef Lenz, David W. Craig, John D. Carpten
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 3932.
https://doi.org/10.1158/1538-7445.AM2024-3932
Published: 22 March 2024
View article titled, Abstract 3932: Multi-omics characterization of molecular features and global-local genomic ancestry analysis of colorectal cancer in Hispanic-Latinos
Journal Articles

Abstract 6109: Determinants of generalized self-efficacy and genetic knowledge among Hispanic/Latino colorectal cancer patients participating in ENLACE: A Cancer Moonshot Study

Joel Sanchez Mendez, Julie O. Culver, Charité N. Ricker, Natalia Gutierrez, Sandra Algaze, John D. Carpten, Heinz-Josef Lenz, Mariana C. Stern
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 6109.
https://doi.org/10.1158/1538-7445.AM2024-6109
Published: 22 March 2024
View article titled, Abstract 6109: Determinants of generalized self-efficacy and genetic knowledge among Hispanic/Latino colorectal cancer patients participating in ENLACE: A Cancer Moonshot Study
Journal Articles

Abstract 3117: Molecular and clinical correlates of genetic ancestry in a diverse, admixed cancer dataset

Mackenzie D. Postel, Jamie K. Teer, Steven A. Eschrich, Julie Dutil, Erin M. Siegel, William D. Cress, John D. Carpten, David W. Craig
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 3117.
https://doi.org/10.1158/1538-7445.AM2023-3117
Published: 04 April 2023
View article titled, Abstract 3117: Molecular and clinical correlates of genetic ancestry in a diverse, admixed cancer dataset
Journal Articles

Abstract 6082: Assessing difference in the tumor and immune microenvironment of BRCA1/2 mutated versus BRCA wild type high grade serous ovarian cancers

Jing Qian, Lynda D. Roman, Seeta Rajpara, Monica Neuman, Varun Khetan, David W. Craig, Joseph Carlson, John D. Carpten
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 6082.
https://doi.org/10.1158/1538-7445.AM2023-6082
Published: 04 April 2023
View article titled, Abstract 6082: Assessing difference in the tumor and immune microenvironment of BRCA1/2 mutated versus BRCA wild type high grade serous ovarian cancers
Journal Articles

Abstract 6074: Germline and somatic genomic profiling of urothelial carcinoma

Bing-Jian Feng, Wendy Kohlmann, David A. Nix, Aaron Atkinson, Kenneth M. Boucher, Courtney Carroll, Jill Kolesar, Eric A. Singer, Stephen B. Edge, Kamal Sahu, Alejandro Sanchez, Mikaela Larson, Michelle L. Churchman, Laura Graham, John D. Carpten, Yousef Zakharia, Lindsey Byrne, Rohit K. Jain, Kenneth G. Nepple, Ahmad Shabsigh, Jad Chahoud, Sumati Gupta
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 6074.
https://doi.org/10.1158/1538-7445.AM2023-6074
Published: 04 April 2023
View article titled, Abstract 6074: Germline and somatic genomic profiling of urothelial carcinoma
Journal Articles

Abstract 1515: Tumor molecular profiling and spatial transcriptomics to assess colorectal cancer heterogeneity and microenvironment

Enrique Velazquez Villarreal, Seeta Rajpara, Yuxin Jin, Jing Qian, Bohan Zhang, Brigette Waldrup, Donna Loza, Heinz-Josef Lenz, David W. Craig, John D. Carpten
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 1515.
https://doi.org/10.1158/1538-7445.AM2023-1515
Published: 04 April 2023
View article titled, Abstract 1515: Tumor molecular profiling and spatial transcriptomics to assess colorectal cancer heterogeneity and microenvironment
Journal Articles

Spatial Transcriptomic Analysis of a Diverse Patient Cohort Reveals a Conserved Architecture in Triple-Negative Breast Cancer

Rania Bassiouni, Michael O. Idowu, Lee D. Gibbs, Valentina Robila, Pamela J. Grizzard, Michelle G. Webb, Jiarong Song, Ashley Noriega, David W. Craig, John D. Carpten
Journal: Cancer Research
Cancer Res (2023) 83 (1): 34–48.
https://doi.org/10.1158/0008-5472.CAN-22-2682
Published: 04 January 2023
View article titled, Spatial Transcriptomic Analysis of a Diverse Patient Cohort Reveals a Conserved Architecture in Triple-Negative Breast Cancer
Open the PDF for Spatial Transcriptomic Analysis of a Diverse Patient Cohort Reveals a Conserved Architecture in Triple-Negative Breast Cancer in another window
Includes: Supplementary data
Journal Articles

Abstract 2032: Comprehensive spatial transcriptomic analysis of an integrated, diverse cohort reveals distinct molecular topographic patterns in triple negative breast cancer

Rania Bassiouni, Michael Idowu, Lee D. Gibbs, Pamela J. Grizzard, Michelle G. Webb, Ashley Noriega, Valentina Robila, David W. Craig, John D. Carpten
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 2032.
https://doi.org/10.1158/1538-7445.AM2022-2032
Published: 15 June 2022
View article titled, Abstract 2032: Comprehensive spatial transcriptomic analysis of an integrated, diverse cohort reveals distinct molecular topographic patterns in triple negative breast cancer
Journal Articles

Abstract 772: Single cell whole genome sequencing to assess tumor heterogeneity in endometrial cancer

Enrique Velazquez Villarreal, Lee D. Gibbs, Dana Mahinbakht, Diane M. Da Silva, Lynda D. Roman, David W. Craig, John D. Carpten
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 772.
https://doi.org/10.1158/1538-7445.AM2022-772
Published: 15 June 2022
View article titled, Abstract 772: Single cell whole genome sequencing to assess tumor heterogeneity in endometrial cancer
Journal Articles

Abstract 2996: Creating PDXs from continental African breast tumors: addressing racial inequity through science

Evelyn M. Jiagge, Tahra K. Suhan, Jessica M. Bensenhaver, Michele Dziubinski, Joseph K. Oppong, Francis Aitpillah, Awuah Baffour, John D. Carpten, Lisa A. Newman, Sofia D. Merajver, Max S. Wicha
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2996.
https://doi.org/10.1158/1538-7445.AM2021-2996
Published: 01 July 2021
View article titled, Abstract 2996: Creating PDXs from continental African breast tumors: addressing racial inequity through science
Journal Articles

Abstract 2199: Identifying genomic heterogeneity at single-cell resolution in endometrial cancer

Enrique I. Velazquez Villarreal, Lee D. Gibbs, Dana Mahinbakht, Diane M. Da Silva, Lynda D. Roman, David W. Craig, John D. Carpten
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2199.
https://doi.org/10.1158/1538-7445.AM2021-2199
Published: 01 July 2021
View article titled, Abstract 2199: Identifying genomic heterogeneity at single-cell resolution in endometrial cancer
Journal Articles

Abstract NG03: Spatial RNA-seq reveals intratumor heterogeneity and transcriptional substructure in high-grade ovarian cancers

Lee D. Gibbs, Stephen R. Williams, Neil I. Weisenfeld, David W. Craig, Rania Bassiouni, Nigel F. Delaney, Diane Da Silva, Yifeng Yin, Solomon Rotimi, Jennifer Chew, Meghan Frey, Michelle Webb, Jing Qian, Heather Miller, Laila Murderspach, Troy McEachron, Lynda Roman, John D. Carpten
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): NG03.
https://doi.org/10.1158/1538-7445.AM2020-NG03
Published: 15 August 2020
View article titled, Abstract NG03: Spatial RNA-seq reveals intratumor heterogeneity and transcriptional substructure in high-grade ovarian cancers
Journal Articles

Abstract 2507: Understanding endometrial cancer heterogeneity at single-cell resolution

Enrique I. Velazquez Villarreal, John D. Carpten, David W. Craig
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 2507.
https://doi.org/10.1158/1538-7445.AM2020-2507
Published: 15 August 2020
View article titled, Abstract 2507: Understanding endometrial cancer heterogeneity at single-cell resolution
Journal Articles

Abstract 4703: Single Cell CNV End to End workflow to uncover tumor heterogeneity in a murine breast cancer model

Lee D. Gibbs, Jing Qian, Michelle Webb, Sharon Chang, Zarko Manojlovic, Enrique I. Velazquez, Troy McEachron, David W. Craig, John D. Carpten
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 4703.
https://doi.org/10.1158/1538-7445.AM2019-4703
Published: 01 July 2019
View article titled, Abstract 4703: Single Cell CNV End to End workflow to uncover tumor heterogeneity in a murine breast cancer model
Journal Articles

Abstract 4240: Rare candidate variants shared among affected family members in the African American Hereditary Prostate Cancer Study families

Deyana D. Lewis, Shukmei Wong, Angela S. Baker, Isaac Powell, John D. Carpten, Joan E. Bailey-Wilson, Cheryl Cropp
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 4240.
https://doi.org/10.1158/1538-7445.AM2019-4240
Published: 01 July 2019
View article titled, Abstract 4240: Rare candidate variants shared among affected family members in the African American Hereditary Prostate Cancer Study families
Journal Articles

Abstract 3488: Loss of nuclear alpha-catenin is associated with race, aggressive disease, and chemoresistance in triple negative breast cancer

Rania Bassiouni, Yunchi Li, Victoria David-Dirgo, Krystine Garcia-Mansfield, Ritin Sharma, Patrick Pirrotte, Nasreen Vohra, Sandeep Singhal, Kevin Gardner, John D. Carpten
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 3488.
https://doi.org/10.1158/1538-7445.AM2019-3488
Published: 01 July 2019
View article titled, Abstract 3488: Loss of nuclear alpha-catenin is associated with race, aggressive disease, and chemoresistance in triple negative breast cancer
Journal Articles

Abstract 2530: Understanding cancer heterogeneity in relation to minor sub-clones at single cell profiling level in renal cell carcinoma

Enrique I. Velazquez Villarreal, John D. Carpten, David W. Craig
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 2530.
https://doi.org/10.1158/1538-7445.AM2019-2530
Published: 01 July 2019
View article titled, Abstract 2530: Understanding cancer heterogeneity in relation to minor sub-clones at single cell profiling level in renal cell carcinoma
Journal Articles

Abstract 437: Leveraging new methods in single-cell copy number analysis and clonotype detection to uncover and characterize hidden subclones within standard cell lines

Enrique I. Velazquez Villarreal, Vijay Kumar, Yifeng Yin, John D. Carpten, David W. Craig
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 437.
https://doi.org/10.1158/1538-7445.AM2018-437
Published: 01 July 2018
View article titled, Abstract 437: Leveraging new methods in single-cell copy number analysis and clonotype detection to uncover and characterize hidden subclones within standard cell lines