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Journal Articles

Abstract 4592: TERT expression predicts progression-free survival in meningiomas

Free
Chloe Gui, Justin Z. Wang, Vikas Patil, Andrew Ajisebutu, Jeff Liu, Zeel Patel, Rebeca Yakubov, Ramneet Kaloti, Yosef Ellenbogen, Christopher Wilson, Aaron Cohen-Gadol, Ghazaleh Tabatabai, Marcos Tatagiba, Felix Behling, Eric C. Holland, Jill S. Barnholtz-Sloan, Andrew E. Sloan, Craig Horbinski, Silky Chotai, Lola B. Chambless, Andrew Gao, Serge Makarenko, Stephen Yip, Kenneth Aldape, Farshad Nassiri, Gelareh Zadeh
Journal: Cancer Research
Cancer Res (2025) 85 (8_Supplement_1): 4592.
https://doi.org/10.1158/1538-7445.AM2025-4592
Published: 21 April 2025
View articletitled, Abstract 4592: TERT expression predicts progression-free survival in meningiomas
Journal Articles

Interactions between Ploidy and Resource Availability Shape Clonal Evolution in Glioblastoma

Available to Purchase
Zuzanna Nowicka, Frederika Rentzeperis, Vural Tagal, Jamie K. Teer, Didem Ilter, Richard J. Beck, Jackson P. Cole, Ana Forero Pinto, Joanne D. Tejero, Elisa Scanu, Thomas Veith, William Dominguez-Viqueira, Konstantin Maksin, Francisco Carrillo-Perez, Olivier Gevaert, Xiaonan Xu, Florian A. Karreth, Mahmoud A. Abdalah, Giada Fiandaca, Stefano Pasetto, Sandhya Prabhakaran, Andrew Schultz, Awino Maureiq E. Ojwang’, Jill S. Barnholtz-Sloan, Joaquim M. Farinhas, Ana P. Gomes, Parag Katira, Noemi Andor
Journal: Cancer Research
Cancer Res (2025) 85 (8): 1544–1559.
https://doi.org/10.1158/0008-5472.CAN-24-0401
Published: 15 April 2025
View articletitled, Interactions between Ploidy and Resource Availability Shape Clonal Evolution in Glioblastoma
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Includes: Supplementary data
Journal Articles

Interactions Between Ploidy and Resource Availability Shape Clonal Evolution in Glioblastoma

Available to Purchase
Zuzanna Nowicka, Frederika Rentzeperis, Vural Tagal, Jamie K. Teer, Didem Ilter, Richard J. Beck, Jackson P. Cole, Ana M. Forero Pinto, Joanne D. Tejero, Elisa Scanu, Thomas Veith, William Dominguez-Viqueira, Konstantin Maksin, Francisco M. Carrillo-Perez, Olivier Gevaert, Xiaonan Xu, Florian A. Karreth, Mahmoud A. Abdalah, Giada Fiandaca, Stefano Pasetto, Sandhya Prabhakaran, Andrew Schultz, Awino Maureiq E. Ojwang’, Jill S. Barnholtz-Sloan, Joaquim M. Farinhas, Ana P. Gomes, Parag Katira, Noemi Andor
Journal: Cancer Research
Cancer Res (2025)
https://doi.org/10.1158/0008-5472.CAN-24-0401
Published: 11 February 2025
View articletitled, Interactions Between Ploidy and Resource Availability Shape Clonal Evolution in Glioblastoma
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Includes: Supplementary data
Journal Articles

NCI Cancer Research Data Commons: Core Standards and Services

Open Access
Arthur Brady, Amanda Charbonneau, Robert L. Grossman, Heather H. Creasy, Robinette Renner, Todd Pihl, John Otridge, Erika Kim, the CRDC Program, Jill S. Barnholtz-Sloan, Anthony R. Kerlavage
Journal: Cancer Research
Cancer Res (2024) 84 (9): 1384–1387.
https://doi.org/10.1158/0008-5472.CAN-23-2655
Published: 02 May 2024
View articletitled, NCI Cancer Research Data Commons: Core Standards and Services
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Includes: Supplementary data
Journal Articles

NCI Cancer Research Data Commons: Cloud-Based Analytic Resources

Open Access
David Pot, Zelia Worman, Alexander Baumann, Shirish Pathak, Rowan Beck, Erin Beck, Katherine Thayer, Tanja M. Davidsen, Erika Kim, Brandi Davis-Dusenbery, John Otridge, Todd Pihl, The CRDC Program, Jill S. Barnholtz-Sloan, Anthony R. Kerlavage
Journal: Cancer Research
Cancer Res (2024) 84 (9): 1396–1403.
https://doi.org/10.1158/0008-5472.CAN-23-2657
Published: 02 May 2024
View articletitled, NCI Cancer Research Data Commons: Cloud-Based Analytic Resources
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Includes: Supplementary data
Journal Articles

NCI Cancer Research Data Commons: Lessons Learned and Future State

Open Access
Erika Kim, Tanja Davidsen, Brandi N Davis-Dusenbery, Alexander Baumann, Angela Maggio, Zhaoyi Chen, Daoud Meerzaman, Esmeralda Casas-Silva, David Pot, Todd Pihl, John Otridge, Eve Shalley, The CRDC Program, Jill S. Barnholtz-Sloan, Anthony R. Kerlavage
Journal: Cancer Research
Cancer Res (2024) 84 (9): 1404–1409.
https://doi.org/10.1158/0008-5472.CAN-23-2730
Published: 02 May 2024
View articletitled, NCI Cancer Research Data Commons: Lessons Learned and Future State
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Includes: Supplementary data
Journal Articles

NCI Cancer Research Data Commons: Resources to Share Key Cancer Data

Open Access
Zhining Wang, Tanja M. Davidsen, Gina R. Kuffel, KanakaDurga Addepalli, Amanda Bell, Esmeralda Casas-Silva, Hayley Dingerdissen, Keyvan Farahani, Andrey Fedorov, Sharon Gaheen, Robert L. Grossman, Ron Kikinis, Erika Kim, John Otridge, Todd Pihl, Melissa Porter, Henry Rodriguez, Louis M. Staudt, Ratna R. Thangudu, Sudha Venkatachari, Jean Claude Zenklusen, Xu Zhang, The CRDC Program, Jill S. Barnholtz-Sloan, Anthony R. Kerlavage
Journal: Cancer Research
Cancer Res (2024) 84 (9): 1388–1395.
https://doi.org/10.1158/0008-5472.CAN-23-2468
Published: 02 May 2024
View articletitled, NCI Cancer Research Data Commons: Resources to Share Key Cancer Data
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Includes: Supplementary data
Journal Articles

Abstract 3764: Spatially resolved immune landscape revealed sex-biased T-cell infiltration in glioblastoma

Free
Yue Hao, George Reid, Angela Baker, Karen L. Fink, George J. Snipes, Bruce E. Mickey, Andrew E. Sloan, Jill S. Barnholtz-Sloan, Michael Berens
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 3764.
https://doi.org/10.1158/1538-7445.AM2024-3764
Published: 22 March 2024
View articletitled, Abstract 3764: Spatially resolved immune landscape revealed sex-biased T-cell infiltration in glioblastoma
Journal Articles

The Epigenetic Evolution of Glioma Is Determined by the IDH1 Mutation Status and Treatment Regimen

Open Access
Tathiane M. Malta, Thais S. Sabedot, Natalia S. Morosini, Indrani Datta, Luciano Garofano, Wies Vallentgoed, Frederick S. Varn, Kenneth Aldape, Fulvio D'Angelo, Spyridon Bakas, Jill S. Barnholtz-Sloan, Hui K. Gan, Mohammad Hasanain, Ann-Christin Hau, Kevin C. Johnson, Simona Cazacu, Ana C. deCarvalho, Mustafa Khasraw, Emre Kocakavuk, Mathilde C.M. Kouwenhoven, Simona Migliozzi, Simone P. Niclou, Johanna M. Niers, D. Ryan Ormond, Sun Ha Paek, Guido Reifenberger, Peter A. Sillevis Smitt, Marion Smits, Lucy F. Stead, Martin J. van den Bent, Erwin G. Van Meir, Annemiek Walenkamp, Tobias Weiss, Michael Weller, Bart A. Westerman, Bauke Ylstra, Pieter Wesseling, Anna Lasorella, Pim J. French, Laila M. Poisson, Consortium The GLASS, Adelheid Woehrer, Allison K Lowman, Ana C deCarvalho, Ana Valeria Castro, Andrea Transou, Andrew R Brodbelt, Ann-Christin Hau, Anna Lasorella, Anna Golebiewska, Annemiek Walenkamp, Annette M Molinaro, Antonio Iavarone, Azzam Ismail, Bart A Westerman, Bauke Ylstra, Christoph Bock, D. Ryan Ormond, Daniel J Brat, Emre Kocakavuk, Erwin G Van Meir, Floris P Barthel, Frederick S Varn, Fulvio D'Angelo, Gaetano Finocchiaro, Ganesh Rao, Gelareh Zadeh, Guido Reifenberger, Ho Keu ngNg, Hoon Kim, Houtan Noushmehr, Hrvoje Miletic, Hui K Gan, Indrani Datta, Jack Rock, James M Snyder, Jason T Huse, Jennifer M Connelly, Jill S Barnholtz-Sloan, Johanna M Niers, John F deGroot, Kadir C Akdemir, Kasthuri S Kannan, Keith L Ligon, Kenneth Aldape, Ketan R Bulsara, Kevin C Johnson, Kristin D Alfaro, Laila M Poisson, Luciano Garofano, Lucy F Stead, MacLean P Nasrallah, Marion Smits, Martin J van den Bent, Mathilde CM Kouwenhoven, Michael Weller, Mohammad Hasanain, Mustafa Khasraw, Peter V Gould, Peter A Sillevis Smitt, Peter S LaViolette, Philip D Tatman, Pieter Wesseling, Pim J French, Rameen Beroukhim, Roel G.W. Verhaak, Simona Migliozzi, Simone P Niclou, Spyridon Bakas, Steven Kalkanis, Sun Ha Paek, Susan C Short, Tabatabai Ghazaleh, Tathiane M Malta, Thais S Sabedot, Tobias Weiss, Tobias Walbert, Ujjwal Baid, Wies Vallentgoed, W. K. Alfred Yung, Roel G.W. Verhaak, Antonio Iavarone, Houtan Noushmehr
Journal: Cancer Research
Cancer Res (2024) 84 (5): 741–756.
https://doi.org/10.1158/0008-5472.CAN-23-2093
Published: 04 March 2024
View articletitled, The Epigenetic Evolution of Glioma Is Determined by the IDH1 Mutation Status and Treatment Regimen
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Includes: Supplementary data
Journal Articles

Abstract A031: Prospective and clinical prediction in a retrospective trial that experimentally validated an AI/ML-derived whole-genome predictor as the most accurate and precise predictor of survival and response to treatment in glioblastoma

Free
Sri Priya Ponnapalli, Penelope Miron, Kristy L. S. Miskimen, Kristin A. Waite, Nadiya Sosonkina, Sara E. Coppens, Anthony C. Bryan, Estevan P. Kiernan, Huanming Yang, Jay Bowen, Ghunwa A. Nakouzi, Jill S. Barnholtz-Sloan, Andrew E. Sloan, Tiffany R. Hodges, Orly Alter
Journal: Cancer Research
Cancer Res (2024) 84 (5_Supplement_1): A031.
https://doi.org/10.1158/1538-7445.BRAIN23-A031
Published: 04 March 2024
View articletitled, Abstract A031: Prospective and clinical prediction in a retrospective trial that experimentally validated an AI/ML-derived whole-genome predictor as the most accurate and precise predictor of survival and response to treatment in glioblastoma
Journal Articles

Abstract 26: Influence of geographic/ancestral origin on glioma incidence and outcomes in US Hispanics

Free
Kyle M. Walsh, Corey Neff, Melissa L. Bondy, Carol Kruchko, Jason T. Huse, Christopher I. Amos, Jill S. Barnholtz-Sloan, Quinn T. Ostrom
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 26.
https://doi.org/10.1158/1538-7445.AM2022-26
Published: 15 June 2022
View articletitled, Abstract 26: Influence of geographic/ancestral origin on glioma incidence and outcomes in US Hispanics
Journal Articles

Abstract 2168: Longitudinal analysis of diffuse glioma reveals cell state dynamics at recurrence associated with changes in genetics and the microenvironment

Free
Frederick S. Varn, Kevin C. Johnson, Jan Martinek, Jason T. Huse, MacLean P. Nasrallah, Pieter Wesseling, Lee A. Cooper, Tathiane M. Malta, Taylor E. Wade, Thais S. Sabedot, Daniel J. Brat, Peter V. Gould, Adelheid Wöehrer, Kenneth Aldape, Azzam Ismail, Floris P. Barthel, Hoon Kim, Emre Kocakavuk, Nazia Ahmed, Kieron White, Santhosh Sivajothi, Indrani Datta, Jill S. Barnholtz-Sloan, Spyridon Bakas, Fulvio D'Angelo, Hui K. Gan, Luciano Garofano, Mustafa Khasraw, Simona Migliozzi, D. Ryan Ormond, Sun Ha Paek, Erwin G. Van Meir, Annemiek M. Walenkamp, Colin Watts, Michael Weller, Tobias Weiss, Karolina Palucka, Lucy F. Stead, Laila M. Poisson, Houtan Noushmehr, Antonio Iavarone, Roel G. Verhaak, The GLASS Consortium
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 2168.
https://doi.org/10.1158/1538-7445.AM2022-2168
Published: 15 June 2022
View articletitled, Abstract 2168: Longitudinal analysis of diffuse glioma reveals cell state dynamics at recurrence associated with changes in genetics and the microenvironment
Journal Articles

Abstract SY07-02: Gaining biologic insights into glioblastoma using proteomics

Free
Jill S. Barnholtz-Sloan
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): SY07-02.
https://doi.org/10.1158/1538-7445.AM2021-SY07-02
Published: 01 July 2021
View articletitled, Abstract SY07-02: Gaining biologic insights into glioblastoma using proteomics
Journal Articles

Abstract 2170: Proteogenomic and metabolomic characterization of human glioblastoma

Free
Liang-Bo Wang, Alla Karpova, Marina A. Gritsenko, Jennifer E. Kyle, Song Cao, Yize Li, Dmitry Rykunov, Antonio Colaprico, Joseph Rothstein, Runyu Hong, Vasileios Stathias, MacIntosh Cornwell, Francesca Petralia, Richard D. Smith, Antonio Iavarone, Milan G. Chheda, Jill S. Barnholtz-Sloan, Karin D. Rodland, Tao Liu, Li Ding, Clinical Proteomic Tumor Analysis Consortium
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2170.
https://doi.org/10.1158/1538-7445.AM2021-2170
Published: 01 July 2021
View articletitled, Abstract 2170: Proteogenomic and metabolomic characterization of human glioblastoma
Journal Articles

5-Fluorouracil Enhances the Antitumor Activity of the Glutaminase Inhibitor CB-839 against PIK3CA-Mutant Colorectal Cancers

Available to Purchase
Yiqing Zhao, Xiujing Feng, Yicheng Chen, J. Eva Selfridge, Shashank Gorityala, Zhanwen Du, Janet M. Wang, Yujun Hao, Gino Cioffi, Ronald A. Conlon, Jill S. Barnholtz-Sloan, Joel Saltzman, Smitha S. Krishnamurthi, Shaveta Vinayak, Martina Veigl, Yan Xu, David L. Bajor, Sanford D. Markowitz, Neal J. Meropol, Jennifer R. Eads, Zhenghe Wang
Journal: Cancer Research
Cancer Res (2020) 80 (21): 4815–4827.
https://doi.org/10.1158/0008-5472.CAN-20-0600
Published: 03 November 2020
View articletitled, 5-Fluorouracil Enhances the Antitumor Activity of the Glutaminase Inhibitor CB-839 against PIK3CA-Mutant Colorectal Cancers
Open the PDF for 5-Fluorouracil Enhances the Antitumor Activity of the Glutaminase Inhibitor CB-839 against PIK3CA-Mutant Colorectal Cancers in another window
Includes: Supplementary data
Journal Articles

Abstract 5705: Mechanisms and therapeutic implications of hypermutation in gliomas

Free
Mehdi Touat, Yvonne Y. Li, Adam N. Boynton, Liam F. Spurr, Bryan Iorgulescu, Craig L. Bohrson, Isidro Cortes-Ciriano, Jack E. Geduldig, Kristine Pelton, Mary J. Lim-Fat, Sangita Pal, Shakti H. Ramkissoon, Frank Dubois, Charlotte Bellamy, Naomi Currimjee, Kenin Qian, Seth Malinowski, Aniket Shetty, Kin-Hoe Chow, Maïté Verreault, Erell Guillerm, Samy Ammari, Frédéric Beuvon, Karima Mokhtari, Agusti Alentorn, Caroline Dehais, Caroline Houillier, Florence Laigle-Donadey, Dimitri Psimaras, Alexandre Carpentier, Philippe Cornu, Laurent Capelle, Bertrand Mathon, Jill S. Barnholtz-Sloan, Arnab Chakravarti, Wenya L. Bi, Garrett M. Frampton, Marc Sanson, Brian M. Alexander, Andrew Cherniack, Patrick Y. Wen, David A. Reardon, Aurelien Marabelle, Peter J. Park, Ahmed Idbaih, Rameen Beroukhim, Pratiti Bandopadhayay, Franck Bielle, Keith L. Ligon
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 5705.
https://doi.org/10.1158/1538-7445.AM2020-5705
Published: 15 August 2020
View articletitled, Abstract 5705: Mechanisms and therapeutic implications of hypermutation in gliomas
Journal Articles

Abstract 869: Leveraging a novel analysis pipeline for outcomes predictions from routine MRIs

Free
Vachan Vadmal, Kristin Waite, Jill S. Barnholtz-Sloan
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 869.
https://doi.org/10.1158/1538-7445.AM2020-869
Published: 15 August 2020
View articletitled, Abstract 869: Leveraging a novel analysis pipeline for outcomes predictions from routine MRIs
Journal Articles

Abstract 4173: Previously identified common glioma risk SNPs are associated with familial glioma

Free
Quinn T. Ostrom, Georgina Armstrong, Christopher I. Amos, Jonine L. Bernstein, Elizabeth B. Claus, Jeanette E. Eckel-Passow, Dora Il'yasova, Christoffer Johansen, Daniel H. Lachance, Rose K. Lai, Ryan T. Merrell, Sara H. Olson, Joellen H. Schildkraut, Sanjay S. Shete, Richard S. Houlston, Robert B. Jenkins, Margaret R. Wrensch, Beatrice Melin, Jill S. Barnholtz-Sloan, Melissa L. Bondy
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 4173.
https://doi.org/10.1158/1538-7445.AM2019-4173
Published: 01 July 2019
View articletitled, Abstract 4173: Previously identified common glioma risk SNPs are associated with familial glioma
Journal Articles

Transcriptome-Wide Association Study Identifies New Candidate Susceptibility Genes for Glioma

Free
Isabelle Atkins, Ben Kinnersley, Quinn T. Ostrom, Karim Labreche, Dora Il'yasova, Georgina N. Armstrong, Jeanette E. Eckel-Passow, Minouk J. Schoemaker, Markus M. Nöthen, Jill S. Barnholtz-Sloan, Anthony J. Swerdlow, Matthias Simon, Preetha Rajaraman, Stephen J. Chanock, Joellen Shildkraut, Jonine L. Bernstein, Per Hoffmann, Karl-Heinz Jöckel, Rose K. Lai, Elizabeth B. Claus, Sara H. Olson, Christoffer Johansen, Margaret R. Wrensch, Beatrice Melin, Robert B. Jenkins, Marc Sanson, Melissa L. Bondy, Richard S. Houlston
Journal: Cancer Research
Series: Author Choice
Cancer Res (2019) 79 (8): 2065–2071.
https://doi.org/10.1158/0008-5472.CAN-18-2888
Published: 15 April 2019
View articletitled, Transcriptome-Wide Association Study Identifies New Candidate Susceptibility Genes for Glioma
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Includes: Supplementary data
Journal Articles

Abstract 4220: Heterogeneous distribution of prognostic protein markers in glioblastoma

Free
Lindsay C. Stetson, Quinn T. Ostrom, Peter Liao, Andrew E. Sloan, Mark R. Chance, Jill S. Barnholtz-Sloan
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 4220.
https://doi.org/10.1158/1538-7445.AM2018-4220
Published: 01 July 2018
View articletitled, Abstract 4220: Heterogeneous distribution of prognostic protein markers in glioblastoma