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Jill P. Mesirov
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Journal Articles

Abstract 4281: Data driven refinement of gene signatures for enrichment analysis and cell state characterization

Alexander T. Wenzel, Pablo Tamayo, Jill P. Mesirov
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 4281.
https://doi.org/10.1158/1538-7445.AM2023-4281
Published: 04 April 2023
View article titled, Abstract 4281: Data driven refinement of gene signatures for enrichment analysis and cell state characterization
Journal Articles

Abstract 2073: Genomics to Notebook (g2nb): Extending the electronic notebook to address the needs of cancer bioinformatics

Michael M. Reich, Thorin Tabor, John Liefeld, Jayadev Joshi, Forrest Kim, Helga Thorvaldsdottir, Daniel Blankenberg, Jill P. Mesirov
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 2073.
https://doi.org/10.1158/1538-7445.AM2023-2073
Published: 04 April 2023
View article titled, Abstract 2073: Genomics to Notebook (g2nb): Extending the electronic notebook to address the needs of cancer bioinformatics
Journal Articles

Abstract 2868: A chemogenetic approach reveals a GPCR-Gαs-PKA signaling axis promoting T cell dysfunction and cancer immunotherapy failure

Bryan S. Yung, Victoria H. Wu, Farhoud Faraji, Robert Saddawi-Konefka, Zhiyong Wang, Alexander T. Wenzel, Miranda Song, Meghana S. Pagadala, Lauren M. Clubb, Joshua Chiou, Sanju Sinha, Marin Matic, Francesco Raimondi, Thomas Hoang, Rebecca Berdeaux, Dario A. Vignali, Ramiro Iglesias-Bartolome, Hannah Carter, Eytan Ruppin, Jill P. Mesirov, J. Silvio Gutkind
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 2868.
https://doi.org/10.1158/1538-7445.AM2023-2868
Published: 04 April 2023
View article titled, Abstract 2868: A chemogenetic approach reveals a GPCR-Gαs-PKA signaling axis promoting T cell dysfunction and cancer immunotherapy failure
Journal Articles

Abstract 6568: Extended support for model organisms: The next frontier for the molecular signatures database

Anthony S. Castanza, Jill M. Recla, David Eby, Alexander T. Wenzel, Helga Thorvaldsdottir, Carol J. Bult, Jill P. Mesirov
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 6568.
https://doi.org/10.1158/1538-7445.AM2023-6568
Published: 04 April 2023
View article titled, Abstract 6568: Extended support for model organisms: The next frontier for the molecular signatures database
Journal Articles

Abstract 5032: Data driven refinement of gene signatures for enrichment analysis and cell state characterization

Alexander T. Wenzel, Pablo Tamayo, Jill P. Mesirov
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 5032.
https://doi.org/10.1158/1538-7445.AM2022-5032
Published: 15 June 2022
View article titled, Abstract 5032: Data driven refinement of gene signatures for enrichment analysis and cell state characterization
Journal Articles

Abstract 1903: GenePattern Notebook: An integrative analytical environment for cancer research

Michael M. Reich, Thorin Tabor, Edwin Juarez, Alexander Wenzel, Ted Liefeld, Barbara Hill, David Eby, Forrest Kim, Helga Thorvaldsdóttir, Pablo Tamayo, Jill P. Mesirov
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 1903.
https://doi.org/10.1158/1538-7445.AM2022-1903
Published: 15 June 2022
View article titled, Abstract 1903: GenePattern Notebook: An integrative analytical environment for cancer research
Journal Articles

Abstract 3825: Germline modifiers of the tumor immune microenvironment reveal drivers of immunotherapy response

Meghana Pagadala, Victoria Wu, Eva Pérez-Guijarro, Hyo Kim, Andrea Castro, James Talwar, Cristian Gonzalez-Colin, Steven Cao, Benjamin J. Schmiedel, Timothy Sears, Shervin Goudarzi, Divya Kirani, Rany M. Salem, Gerald P. Morris, Olivier Harismendy, Sandip P. Patel, Jill P. Mesirov, Maurizio Zanetti, Chi-Ping Day, Chun C. Fan, Wesley K. Thompson, Glenn Merlino, J. Silvio Gutkind, Pandurangan Vijayanand, Hannah Carter
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 3825.
https://doi.org/10.1158/1538-7445.AM2022-3825
Published: 15 June 2022
View article titled, Abstract 3825: Germline modifiers of the tumor immune microenvironment reveal drivers of immunotherapy response
Journal Articles

Abstract 95: The landscape of extrachromosomal circular DNA in medulloblastoma subgroups

Owen S. Chapman, Shanqing Wang, Jens Luebeck, Alexandra Garancher, Jon D. Larson, Joshua Lange, John Crawford, Scott L. Pomeroy, Paul Mischel, Ernest Fraenkel, Robert J. Wechsler-Reya, Vineet Bafna, Jill P. Mesirov, Lukas Chavez
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 95.
https://doi.org/10.1158/1538-7445.AM2021-95
Published: 01 July 2021
View article titled, Abstract 95: The landscape of extrachromosomal circular DNA in medulloblastoma subgroups
Journal Articles

Functional Precision Medicine Identifies New Therapeutic Candidates for Medulloblastoma

Jessica M. Rusert, Edwin F. Juarez, Sebastian Brabetz, James Jensen, Alexandra Garancher, Lianne Q. Chau, Silvia K. Tacheva-Grigorova, Sameerah Wahab, Yoko T. Udaka, Darren Finlay, Huriye Seker-Cin, Brendan Reardon, Susanne Gröbner, Jonathan Serrano, Jonas Ecker, Lin Qi, Mari Kogiso, Yuchen Du, Patricia A. Baxter, Jacob J. Henderson, Michael E. Berens, Kristiina Vuori, Till Milde, Yoon-Jae Cho, Xiao-Nan Li, James M. Olson, Iris Reyes, Matija Snuderl, Terence C. Wong, David P. Dimmock, Shareef A. Nahas, Denise Malicki, John R. Crawford, Michael L. Levy, Eliezer M. Van Allen, Stefan M. Pfister, Pablo Tamayo, Marcel Kool, Jill P. Mesirov, Robert J. Wechsler-Reya
Journal: Cancer Research
Cancer Res (2020) 80 (23): 5393–5407.
https://doi.org/10.1158/0008-5472.CAN-20-1655
Published: 02 December 2020
View article titled, Functional Precision Medicine Identifies New Therapeutic Candidates for Medulloblastoma
Open the PDF for Functional Precision Medicine Identifies New Therapeutic Candidates for Medulloblastoma in another window
Includes: Supplementary data
Journal Articles

Abstract 3207: GenePattern Notebook: An integrative analytical environment for cancer research

Michael M. Reich, Thorin Tabor, Ted Liefeld, Edwin Juarez, Barbara Hill, Helga Thorvaldsdottir, Pablo Tamayo, Jill P. Mesirov
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 3207.
https://doi.org/10.1158/1538-7445.AM2020-3207
Published: 15 August 2020
View article titled, Abstract 3207: GenePattern Notebook: An integrative analytical environment for cancer research
Journal Articles

Abstract 4411: A gene set enrichment analysis approach in single-cells along pseudotime trajectories reveals the dynamic activity of oncogenic pathways

Alexander T. Wenzel, Devora Champa, Stephen B. Howell, Jill P. Mesirov, Olivier Harismendy
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 4411.
https://doi.org/10.1158/1538-7445.AM2020-4411
Published: 15 August 2020
View article titled, Abstract 4411: A gene set enrichment analysis approach in single-cells along pseudotime trajectories reveals the dynamic activity of oncogenic pathways
Journal Articles

Abstract 447: Integrated omics modeling of transcriptional regulation in medulloblastoma subtypes

Owen S. Chapman, Tobias Ehrenberger, Tenley C. Archer, Maxwell P. Gold, Filip Mundt, Miriam Adam, Clarence K. Mah, Karsten Krug, Sahaana Chandran, Jesse R. Dixon, Scot L. Pomeroy, Ernest Fraenkel, Jill P. Mesirov, Lukas Chavez
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 447.
https://doi.org/10.1158/1538-7445.AM2020-447
Published: 15 August 2020
View article titled, Abstract 447: Integrated omics modeling of transcriptional regulation in medulloblastoma subtypes
Journal Articles

Abstract 5106: The GenePattern Notebook environment for reproducible cancer research

Michael M. Reich, Thorin T. Tabor, Ted Liefeld, Barbara Hill, Helga Thorvaldsdottir, Jill P. Mesirov
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 5106.
https://doi.org/10.1158/1538-7445.AM2019-5106
Published: 01 July 2019
View article titled, Abstract 5106: The GenePattern Notebook environment for reproducible cancer research
Journal Articles

Abstract 2279: The GenePattern Notebook environment for reproducible cancer research

Michael M. Reich, Thorin T. Tabor, Ted Liefeld, Barbara Hill, Helga Thorvaldsdottir, Jill P. Mesirov
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 2279.
https://doi.org/10.1158/1538-7445.AM2018-2279
Published: 01 July 2018
View article titled, Abstract 2279: The GenePattern Notebook environment for reproducible cancer research
Journal Articles

Variant Review with the Integrative Genomics Viewer

James T. Robinson, Helga Thorvaldsdóttir, Aaron M. Wenger, Ahmet Zehir, Jill P. Mesirov
Journal: Cancer Research
Cancer Res (2017) 77 (21): e31–e34.
https://doi.org/10.1158/0008-5472.CAN-17-0337
Published: 31 October 2017
View article titled, Variant Review with the Integrative Genomics Viewer
Open the PDF for Variant Review with the Integrative Genomics Viewer in another window
Includes: Multimedia, Supplementary data
Journal Articles

Abstract 2588: GenePattern Notebook: an environment for reproducible cancer research

Michael M. Reich, Thorin T. Tabor, Ted Liefeld, Barbara Hill, Helga Thorvaldsdottir, Jill P. Mesirov
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 2588.
https://doi.org/10.1158/1538-7445.AM2017-2588
Published: 01 July 2017
View article titled, Abstract 2588: GenePattern Notebook: an environment for reproducible cancer research
Journal Articles

Abstract 5273: GenePattern Notebooks: an integrative analytical environment for cancer research

Michael M. Reich, Thorin Tabor, John T. Liefeld, Peter Carr, Barbara Hill, Marc-Danie Nazaire, David Eby, Helga Thorvaldsdottir, Pablo Tamayo, Jill P. Mesirov
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 5273.
https://doi.org/10.1158/1538-7445.AM2016-5273
Published: 15 July 2016
View article titled, Abstract 5273: GenePattern Notebooks: an integrative analytical environment for cancer research
Journal Articles

Abstract 5331: GenomeSpace: An environment for frictionless bioinformatics

Michael M. Reich, John Liefeld, Marco Ocana, Donkeung Jang, James Robinson, Peter Carr, Barbara Hill, Thorin Tabor, Helga Thorvaldsdottir, Aviv Regev, Jill P. Mesirov
Journal: Cancer Research
Cancer Res (2014) 74 (19_Supplement): 5331.
https://doi.org/10.1158/1538-7445.AM2014-5331
Published: 01 October 2014
View article titled, Abstract 5331: GenomeSpace: An environment for frictionless bioinformatics
Journal Articles

Integrative Radiogenomic Profiling of Squamous Cell Lung Cancer

Mohamed E. Abazeed, Drew J. Adams, Kristen E. Hurov, Pablo Tamayo, Chad J. Creighton, Dmitriy Sonkin, Andrew O. Giacomelli, Charles Du, Daniel F. Fries, Kwok-Kin Wong, Jill P. Mesirov, Jay S. Loeffler, Stuart L. Schreiber, Peter S. Hammerman, Matthew Meyerson
Journal: Cancer Research
Series: Author Choice
Cancer Res (2013) 73 (20): 6289–6298.
https://doi.org/10.1158/0008-5472.CAN-13-1616
Published: 14 October 2013
View article titled, Integrative Radiogenomic Profiling of Squamous Cell Lung Cancer
Open the PDF for Integrative Radiogenomic Profiling of Squamous Cell Lung Cancer in another window
Includes: Supplementary data
Journal Articles

Abstract 5141: GenomeSpace: an environment for frictionless bioinformatics.

Michael Reich, John Liefeld, Helga Thorvaldsdottir, Marco Ocana, Thorin Tabor, DK Jang, Jill P. Mesirov
Journal: Cancer Research
Cancer Res (2013) 73 (8_Supplement): 5141.
https://doi.org/10.1158/1538-7445.AM2013-5141
Published: 15 April 2013
View article titled, Abstract 5141: GenomeSpace: an environment for frictionless bioinformatics.