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Journal Articles

Abstract 1249: cBioPortal for Cancer Genomics

Cancer Res (2024) 84 (6_Supplement): 1249.

https://doi.org/10.1158/1538-7445.AM2024-1249

Published: 22 March 2024

View article titled, Abstract 1249: cBioPortal for Cancer Genomics

Journal Articles

Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal

Ino de Bruijn, Ritika Kundra, Brooke Mastrogiacomo, Thinh Ngoc Tran, Luke Sikina, Tali Mazor, Xiang Li, Angelica Ochoa, Gaofei Zhao, Bryan Lai, Adam Abeshouse, Diana Baiceanu, Ersin Ciftci, Ugur Dogrusoz, Andrew Dufilie, Ziya Erkoc, Elena Garcia Lara, Zhaoyuan Fu, Benjamin Gross, Charles Haynes, Allison Heath, David Higgins, Prasanna Jagannathan, Karthik Kalletla, Priti Kumari, James Lindsay, Aaron Lisman, Bas Leenknegt, Pieter Lukasse, Divya Madela, Ramyasree Madupuri, Pim van Nierop, Oleguer Plantalech, Joyce Quach, Adam C. Resnick, Sander Y.A. Rodenburg, Baby A. Satravada, Fedde Schaeffer, Robert Sheridan, Jessica Singh, Rajat Sirohi, Selcuk Onur Sumer, Sjoerd van Hagen, Avery Wang, Manda Wilson, Hongxin Zhang, Kelsey Zhu, Nicole Rusk, Samantha Brown, Jessica A. Lavery, Katherine S. Panageas, Julia E. Rudolph, Michele L. LeNoue-Newton, Jeremy L. Warner, Xindi Guo, Haley Hunter-Zinck, Thomas V. Yu, Shirin Pilai, Chelsea Nichols, Stuart M. Gardos, John Philip, AACR Project GENIE BPC Core Team, AACR Project GENIE Consortium, Kenneth L. Kehl, Gregory J. Riely, Deborah Schrag, Jocelyn Lee, Michael V. Fiandalo, Shawn M. Sweeney, Trevor J. Pugh, Chris Sander, Ethan Cerami, Jianjiong Gao, Nikolaus Schultz

Cancer Res (2023) 83 (23): 3861–3867.

https://doi.org/10.1158/0008-5472.CAN-23-0816

Published: 01 December 2023

View article titled, Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal

Includes: Supplementary data

Journal Articles

Abstract 4256: cBioPortal for Cancer Genomics

Cancer Res (2023) 83 (7_Supplement): 4256.

https://doi.org/10.1158/1538-7445.AM2023-4256

Published: 04 April 2023

View article titled, Abstract 4256: cBioPortal for Cancer Genomics

Journal Articles

Abstract 3628: Comprehensive identification of lineage associated cancer genes in 122 histologies

Cancer Res (2022) 82 (12_Supplement): 3628.

https://doi.org/10.1158/1538-7445.AM2022-3628

Published: 15 June 2022

View article titled, Abstract 3628: Comprehensive identification of lineage associated cancer genes in 122 histologies

Journal Articles

Abstract 1158: A.I.-assisted clinical data curation to determine genomic biomarkers of cancer metastasis

Anisha Luthra, Karl Pichotta, Brooke Mastrogiacomo, Samantha McCarthy, Steven Maron, Jianjiong Gao, Justin Jee, Christopher J. Fong, Nikolaus Schultz

Cancer Res (2022) 82 (12_Supplement): 1158.

https://doi.org/10.1158/1538-7445.AM2022-1158

Published: 15 June 2022

View article titled, Abstract 1158: A.I.-assisted clinical data curation to determine genomic biomarkers of cancer metastasis

Journal Articles

Abstract 1156: Genome Nexus: A comprehensive resource for the annotation and interpretation of genomic variants in cancer

Ino de Bruijn, Xiang Li, Onur Sumer, Benjamin Gross, Robert Sheridan, Angelica Ochoa, Manda Wilson, Avery Wang, Hongxin Zhang, Aaron Lisman, Adam Abeshouse, Sander Rodenburg, Sjoerd van Hagen, Remond Fijneman, Gerrit Meijer, Nikolaus Schultz, Jianjiong Gao

Cancer Res (2022) 82 (12_Supplement): 1156.

https://doi.org/10.1158/1538-7445.AM2022-1156

Published: 15 June 2022

View article titled, Abstract 1156: Genome Nexus: A comprehensive resource for the annotation and interpretation of genomic variants in cancer

Journal Articles

Abstract 1155: cBioPortal for cancer genomics

Cancer Res (2022) 82 (12_Supplement): 1155.

https://doi.org/10.1158/1538-7445.AM2022-1155

Published: 15 June 2022

View article titled, Abstract 1155: cBioPortal for cancer genomics

Journal Articles

Abstract 1928: Prediction of neoadjuvant treatment outcomes with multimodal data integration in breast cancer

Cancer Res (2022) 82 (12_Supplement): 1928.

https://doi.org/10.1158/1538-7445.AM2022-1928

Published: 15 June 2022

View article titled, Abstract 1928: Prediction of neoadjuvant treatment outcomes with multimodal data integration in breast cancer

Journal Articles

Abstract LB149: Luna Pathology: An integrated open source platform for computational pathology research

Doori Rose, Andrew Aukerman, Druv Patel, Arfath Pasha, Armaan Kohli, Ignacio Vázquez-García, Kevin Boehm, Rami Vanguri, Matthew Shabet, Vassiliki Mancoridis, Elizabeth Zakszewski, Benjamin Gross, Christopher Fong, Pegah Khosravi, Sohrab Shah, JianJiong Gao

Cancer Res (2022) 82 (12_Supplement): LB149.

https://doi.org/10.1158/1538-7445.AM2022-LB149

Published: 15 June 2022

View article titled, Abstract LB149: Luna Pathology: An integrated open source platform for computational pathology research

Journal Articles

Abstract 1189: OncoKB, MSK’s precision oncology knowledge base

Sarah P. Suehnholz, Moriah Nissan, Hongxin Zhang, Ritika Kundra, Calvin Lu, Benjamin Xu, Maria E. Arcila, Marc Ladanyi, Michael F. Berger, Ahmet Zehir, Aijaz Syed, Julia E. Rudolph, Ross L. Levine, Ahmet Dogan, Jianjiong Gao, David B. Solit, Nikolaus Schultz, Debyani Chakravarty

Cancer Res (2022) 82 (12_Supplement): 1189.

https://doi.org/10.1158/1538-7445.AM2022-1189

Published: 15 June 2022

View article titled, Abstract 1189: OncoKB, MSK’s precision oncology knowledge base

Journal Articles

Abstract 2834: Integration of genomic and clinical data from 25,000 patients identifies molecular determinants of metastatic potential and organotropisms

Bastien Nguyen, Christopher Fong, Renzo DiNatale, Anisha Luthra, Subhiksha Nandakumar, Henry Walch, Walid K. Chatila, Arjun Rajanna, David B. Solit Solit, Michael F. Berger, Ahmet Zehir, Jianjiong Gao, Francisco Sanchez-Vega, Nikolaus Schultz

Cancer Res (2021) 81 (13_Supplement): 2834.

https://doi.org/10.1158/1538-7445.AM2021-2834

Published: 01 July 2021

View article titled, Abstract 2834: Integration of genomic and clinical data from 25,000 patients identifies molecular determinants of metastatic potential and organotropisms

Journal Articles

Abstract 99: Evolution of OncoKB, a precision oncology knowledgebase

Cancer Res (2021) 81 (13_Supplement): 99.

https://doi.org/10.1158/1538-7445.AM2021-99

Published: 01 July 2021

View article titled, Abstract 99: Evolution of OncoKB, a precision oncology knowledgebase

Journal Articles

Abstract 207: The cBioPortal for Cancer Genomics

Cancer Res (2021) 81 (13_Supplement): 207.

https://doi.org/10.1158/1538-7445.AM2021-207

Published: 01 July 2021

View article titled, Abstract 207: The cBioPortal for Cancer Genomics

Journal Articles

Leveraging Systematic Functional Analysis to Benchmark an In Silico Framework Distinguishes Driver from Passenger MEK Mutants in Cancer

Cancer Res (2020) 80 (19): 4233–4243.

https://doi.org/10.1158/0008-5472.CAN-20-0865

Published: 02 October 2020

View article titled, Leveraging Systematic Functional Analysis to Benchmark an <em>In Silico</em> Framework Distinguishes Driver from Passenger MEK Mutants in Cancer

Includes: Supplementary data

Journal Articles

Abstract 1109: Integrative analysis of clinical and genomic information identifies predictive markers of metastatic risk

Christopher J. Fong, Francisco Sanchez-Vega, Bastien Ngyuen, Anisha Luthra, Subhiksha Nandakumar, Henry Walch, Walid Chatila, Arjun Rajanna, Ahmet Zehir, Michael Berger, Jianjiong Gao, Nikolaus Schultz

Cancer Res (2020) 80 (16_Supplement): 1109.

https://doi.org/10.1158/1538-7445.AM2020-1109

Published: 15 August 2020

View article titled, Abstract 1109: Integrative analysis of clinical and genomic information identifies predictive markers of metastatic risk

Journal Articles

Abstract 3209: The cBioPortal for Cancer Genomics

Cancer Res (2020) 80 (16_Supplement): 3209.

https://doi.org/10.1158/1538-7445.AM2020-3209

Published: 15 August 2020

View article titled, Abstract 3209: The cBioPortal for Cancer Genomics

Journal Articles

Abstract 3208: OncoKB, a precision oncology knowledgebase

Cancer Res (2020) 80 (16_Supplement): 3208.

https://doi.org/10.1158/1538-7445.AM2020-3208

Published: 15 August 2020

View article titled, Abstract 3208: OncoKB, a precision oncology knowledgebase

Journal Articles

Abstract 910: The cBioPortal for cancer genomics

Cancer Res (2019) 79 (13_Supplement): 910.

https://doi.org/10.1158/1538-7445.AM2019-910

Published: 01 July 2019

View article titled, Abstract 910: The cBioPortal for cancer genomics

Journal Articles

Abstract 2736: A molecular and histopathologic map of cancer metastasis

Francisco Sanchez-Vega, Christopher Fong, Walid Chatila, Philip Jonsson, Alexander V. Penson, Renzo G. DiNatale, Michael F. Berger, Ahmet Zehir, Ed Reznik, Jianjiong Gao, Karuna Ganesh, Barry S. Taylor, Nikolaus Schultz

Cancer Res (2019) 79 (13_Supplement): 2736.

https://doi.org/10.1158/1538-7445.AM2019-2736

Published: 01 July 2019

View article titled, Abstract 2736: A molecular and histopathologic map of cancer metastasis

Journal Articles

Abstract 3302: The molecular landscape of oncogenic signaling pathways in The Cancer Genome Atlas

Cancer Res (2018) 78 (13_Supplement): 3302.

https://doi.org/10.1158/1538-7445.AM2018-3302

Published: 01 July 2018

View article titled, Abstract 3302: The molecular landscape of oncogenic signaling pathways in The Cancer Genome Atlas

NARROW

Abstract 1249: cBioPortal for Cancer Genomics

Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal

Abstract 4256: cBioPortal for Cancer Genomics

Abstract 3628: Comprehensive identification of lineage associated cancer genes in 122 histologies

Abstract 1158: A.I.-assisted clinical data curation to determine genomic biomarkers of cancer metastasis

Abstract 1156: Genome Nexus: A comprehensive resource for the annotation and interpretation of genomic variants in cancer

Abstract 1155: cBioPortal for cancer genomics

Abstract 1928: Prediction of neoadjuvant treatment outcomes with multimodal data integration in breast cancer

Abstract LB149: Luna Pathology: An integrated open source platform for computational pathology research

Abstract 1189: OncoKB, MSK’s precision oncology knowledge base

Abstract 2834: Integration of genomic and clinical data from 25,000 patients identifies molecular determinants of metastatic potential and organotropisms

Abstract 99: Evolution of OncoKB, a precision oncology knowledgebase

Abstract 207: The cBioPortal for Cancer Genomics

Leveraging Systematic Functional Analysis to Benchmark an In Silico Framework Distinguishes Driver from Passenger MEK Mutants in Cancer

Abstract 1109: Integrative analysis of clinical and genomic information identifies predictive markers of metastatic risk

Abstract 3209: The cBioPortal for Cancer Genomics

Abstract 3208: OncoKB, a precision oncology knowledgebase

Abstract 910: The cBioPortal for cancer genomics

Abstract 2736: A molecular and histopathologic map of cancer metastasis

Abstract 3302: The molecular landscape of oncogenic signaling pathways in The Cancer Genome Atlas

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