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Journal Articles

Abstract 6520: Intratumoral microbiome profiling using high-depth whole-genome sequencing highlighted Cutibacterium acnes in chemoresistance in ovarian cancer

Free
Tatiana V. Karpinets, Xiaogan Wu, Wayne W. Xy, Amma Asare, Sara Corvigno, Joseph Celestino, Ridge T. Rogers, Raymond N. Montoya, Mark S. Kim, Pamela T. Soliman, Shannon N. Westin, P. Andrew Futreal, Amir A. Jazaeri, Anil K. Sood, Jianhua Zhang, Sanghoon Lee
Journal: Cancer Research
Cancer Res (2025) 85 (8_Supplement_1): 6520.
https://doi.org/10.1158/1538-7445.AM2025-6520
Published: 21 April 2025
View articletitled, Abstract 6520: Intratumoral microbiome profiling using high-depth whole-genome sequencing highlighted Cutibacterium acnes in chemoresistance in ovarian cancer
Journal Articles

Abstract 6659: Defective lipid homeostasis induced by QKI loss is a mutator on gliomagenesis

Free
Yinglu Guan, Takashi Shingu, Kaylene J. Lu, Ece Kilinc, Traver G. Hart, Jianhua Zhang, Yiwen Chen, Betty Y. Kim, Jian Hu
Journal: Cancer Research
Cancer Res (2025) 85 (8_Supplement_1): 6659.
https://doi.org/10.1158/1538-7445.AM2025-6659
Published: 21 April 2025
View articletitled, Abstract 6659: Defective lipid homeostasis induced by QKI loss is a mutator on gliomagenesis
Journal Articles

Abstract 7461: Identifying molecular vulnerabilities in rare cancers using a novel graph-based therapeutic discovery model

Free
Li Zhao, Ying Zhu, Randy Chu, Haifeng Zhu, Stephanie T. Schmidt, Yuntao Yang, Chunjie Jiang, Mark Knafl, Xingzhi Song, Xiaogang Wu, Jianhua Zhang, Sabitha Prabhakaran, Scott Woodman, Timothy Heffernan, Elizabeth Burton, Rare Tumor Initiative Team, Andy Futreal, Bissan Al-Lazikani
Journal: Cancer Research
Cancer Res (2025) 85 (8_Supplement_1): 7461.
https://doi.org/10.1158/1538-7445.AM2025-7461
Published: 21 April 2025
View articletitled, Abstract 7461: Identifying molecular vulnerabilities in rare cancers using a novel graph-based therapeutic discovery model
Journal Articles

Abstract PO2-09-05: Building genomic and transcriptomic data among African American and Black patients with triple-negative inflammatory breast cancer

Free
Wencai Ma, Li Zhao, Gayathri Devi, Savitri Krishnamurthy, Larry Coffer, Angela Alexander, Megumi Kai, Xiaoping Wang, Huong Le-Petross, Miral Patel, Bisrat Debeb, Chandra Bartholomeusz, Jianhua Zhang, Xingzhi Song, Andrew Futreal, Naoto Ueno, Rachel Layman, Anthony Lucci, Jing Wang, Wendy Woodward
Journal: Cancer Research
Cancer Res (2024) 84 (9_Supplement): PO2-09-05.
https://doi.org/10.1158/1538-7445.SABCS23-PO2-09-05
Published: 02 May 2024
View articletitled, Abstract PO2-09-05: Building genomic and transcriptomic data among African American and Black patients with triple-negative inflammatory breast cancer
Journal Articles

Abstract PO3-02-12: Dalpiciclib combination with letrozole as neoadjuvant therapy for HR-positive HER2-negative breast cancer: a single-arm, prospective exploratory clinical study

Free
Jingruo Li, Yuanting Gu, Chuang Du, Jianhua Zhang, Yingying Zhang, Linfeng Zhang, Nan Wang, Lin Li, Fang Wang, Pengwei Lv, Hong Zong, Xinhong Pei, Bingjian Xue, Yan Wang, Dongcheng Gao
Journal: Cancer Research
Cancer Res (2024) 84 (9_Supplement): PO3-02-12.
https://doi.org/10.1158/1538-7445.SABCS23-PO3-02-12
Published: 02 May 2024
View articletitled, Abstract PO3-02-12: Dalpiciclib combination with letrozole as neoadjuvant therapy for HR-positive HER2-negative breast cancer: a single-arm, prospective exploratory clinical study
Journal Articles

Abstract 3387: Spatial analysis revealed distinct molecular and immune landscape in genetic versus carcinogen-induced lung adenocarcinoma precancer mouse models

Free
Bo Zhu, Pingjun Chen, Jian-Rong Li, Muhammad Aminu, Chenyang Li, Hong Chen, Yanhua Tian, Frank R. Rojas, Parra Cuentas Edwin Roger, Ou Shi, Monique B. Nilsson, Alissa Poteete, Shawna M. Hubert, Khaja B. Khan, Wei Lu, Xingzhi Song, Jianhua Zhang, Don L. Gibbons, Luisa M. Solis Soto, Ignacio I. Wistuba, John V. Heymach, Chao Cheng, Jia Wu, Jianjun Zhang
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 3387.
https://doi.org/10.1158/1538-7445.AM2024-3387
Published: 22 March 2024
View articletitled, Abstract 3387: Spatial analysis revealed distinct molecular and immune landscape in genetic versus carcinogen-induced lung adenocarcinoma precancer mouse models
Journal Articles

Abstract 7334: Germline mutations in cancer susceptibility genes in patients with mucosal melanoma

Free
Afsaneh Amouzegar, Xiaogang Wu, James Long, Sabitha Prabhakaran, Latasha Little, Curtis Gumbs, Jared Malke, Julie Simon, Jianhua Zhang, Jennifer Wargo, Paul Scheet, Justin W. Wong, Priyadharsini Nagarajan, Jennifer L. McQuade, Andrew Futreal
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 7334.
https://doi.org/10.1158/1538-7445.AM2024-7334
Published: 22 March 2024
View articletitled, Abstract 7334: Germline mutations in cancer susceptibility genes in patients with mucosal melanoma
Journal Articles

Adipose Triglyceride Lipase Is a Therapeutic Target in Advanced Prostate Cancer That Promotes Metabolic Plasticity

Free
Dominik Awad, Pham Hong Anh Cao, Thomas L. Pulliam, Meredith Spradlin, Elavarasan Subramani, Tristen V. Tellman, Caroline F. Ribeiro, Riccardo Muzzioli, Brittany E. Jewell, Hubert Pakula, Jeffrey J. Ackroyd, Mollianne M. Murray, Jenny J. Han, Mei Leng, Antrix Jain, Badrajee Piyarathna, Jingjing Liu, Xingzhi Song, Jianhua Zhang, Albert R. Klekers, Justin M. Drake, Michael M. Ittmann, Cristian Coarfa, David Piwnica-Worms, Mary C. Farach-Carson, Massimo Loda, Livia S. Eberlin, Daniel E. Frigo
Journal: Cancer Research
Cancer Res (2024) 84 (5): 703–724.
https://doi.org/10.1158/0008-5472.CAN-23-0555
Published: 04 March 2024
View articletitled, Adipose Triglyceride Lipase Is a Therapeutic Target in Advanced Prostate Cancer That Promotes Metabolic Plasticity
Open the PDF for Adipose Triglyceride Lipase Is a Therapeutic Target in Advanced Prostate Cancer That Promotes Metabolic Plasticity in another window
Includes: Supplementary data
Journal Articles

Abstract A029: DDR pathway genes in CRT resistance: Insights from longitudinal whole exome sequencing in cervical cancer

Free
Shafqat F. Ehsan, Rui Wang, Xiaogang Wu, Tatiana V. Karpinets, Julianna K. Bronk, Chiraag Kapadia, Xingzhi Song, Andrew M. Futreal, Ann H. Klopp, Tim Harris, Jianhua Zhang, Lauren E. Colbert
Journal: Cancer Research
Cancer Res (2024) 84 (1_Supplement): A029.
https://doi.org/10.1158/1538-7445.DNAREPAIR24-A029
Published: 09 January 2024
View articletitled, Abstract A029: DDR pathway genes in CRT resistance: Insights from longitudinal whole exome sequencing in cervical cancer
Journal Articles

Abstract 4760: KDM4A promotes NEPC progression through regulation of MYC expression

Free
Celia Sze Ling Mak, Ming Zhu, Xin Liang, Feng Wang, Anh G. Hoang, Xinzhi Song, Peter Shepherd, Derek Liang, Jessica Suh, Jiwon Park, Miao Zhang, Eric Metzger, Roland Schule, Abhinav K. Jain, Ellen Karasik, Barbara A. Foster, Min Gyu Lee, Paul Corn, Christopher J. Logothetis, Ana Aparicio, Nora Navone, Patricia Troncoso, Jianhua Zhang, Sue-Hwa Lin, Guocan Wang
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 4760.
https://doi.org/10.1158/1538-7445.AM2023-4760
Published: 04 April 2023
View articletitled, Abstract 4760: KDM4A promotes NEPC progression through regulation of MYC expression
Journal Articles

Abstract 1395: Genomic and transcriptomic analyses identify distinct features of triple-negative inflammatory breast cancer

Free
Xiaoping Wang, Li Zhao, Takashi Semba, Xingzhi Song, Mark Knafl, Savitri Krishnamurthy, Shan Shao, Larry W. Coffer, II, Angela Alexander, Anita Wood, Swetha Bopparaju, Wendy A. Woodward, Randy Chu, Jianhua Zhang, Scott Woodman, Andrew Futreal, Clinton Yam, Debu Tripathy, Naoto T. Ueno
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 1395.
https://doi.org/10.1158/1538-7445.AM2023-1395
Published: 04 April 2023
View articletitled, Abstract 1395: Genomic and transcriptomic analyses identify distinct features of triple-negative inflammatory breast cancer
Journal Articles

Abstract 6513: Single cell and spatial profiling reveal molecular and immune evolution from precancers to invasive lung adenocarcinomas in genetic and carcinogen-induced mouse models

Free
Bo Zhu, Jian-Rong Li, Hong Chen, Pingjun Chen, Junya Fujimoto, Yanhua Tian, Muhammad Aminu, Chenyang Li, Lingzhi Hong, Alexandre Reuben, Edwin Roger Parra Cuentas, Ou Shi, Monique Nilsson, Alissa Poteete, Shawna Hubert, Khaja Khan, Wei Lu, Daniel Kraushaar, Xingzhi Song, Jianhua Zhang, Don Gibbons, Luisa Solis Soto, Ignacio Wistuba, Jia Wu, John Heymach, Chao Cheng, Jianjun Zhang
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 6513.
https://doi.org/10.1158/1538-7445.AM2023-6513
Published: 04 April 2023
View articletitled, Abstract 6513: Single cell and spatial profiling reveal molecular and immune evolution from precancers to invasive lung adenocarcinomas in genetic and carcinogen-induced mouse models
Journal Articles

Abstract 2375: Whole exome sequencing and immune profiling of cervical adenocarcinoma reveal a “cold” tumor-immune phenotype

Free
Julianna Bronk, Xiaogang Wu, Rui Wang, Ananta Yanamandra, Tatiana Karpinets, Chike Abana, Molly El Alam, Katarina Tomasic, Daniel Lin, Erica Lynn, David Lo, Timothy Harris, Xingzhi Song, Andrew Futreal, Jianhua Zhang, Jagannadha Sastry, Ann Klopp, Lauren Colbert
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 2375.
https://doi.org/10.1158/1538-7445.AM2023-2375
Published: 04 April 2023
View articletitled, Abstract 2375: Whole exome sequencing and immune profiling of cervical adenocarcinoma reveal a “cold” tumor-immune phenotype
Journal Articles

Abstract 97: Multiregional profiling revealed intra-tumor transcriptomic heterogeneity associated with the prognosis in non-small cell lung cancer

Free
Chenyang Li, Thinh T. Nguyen, Jian-Rong Li, Xingzhi Song, Ignacio I. Wistuba, Andy Futureal, Jianhua Zhang, Shawna M. Hubert, Jia Wu, Jianjun Zhang, Chao Cheng
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 97.
https://doi.org/10.1158/1538-7445.AM2023-97
Published: 04 April 2023
View articletitled, Abstract 97: Multiregional profiling revealed intra-tumor transcriptomic heterogeneity associated with the prognosis in non-small cell lung cancer
Journal Articles

Abstract 5473: Genomic profiling of chemotherapy-related clonal hematopoiesis in patients with high-grade serous ovarian cancer

Free
Sara Corvigno, Jun Yao, Li Zhao, Amma Asare, Joseph Celestino, Richard Hajek, Ency Arboleda Goette, Elaine Stur, Emine Bayraktar, Mark S Kim, Ping Song, Qingxiu Zhang, Xingzhi Song, Mohammad Mohammad, Kenna Shaw, Jianhua Zhang, Karen Lu, Amir Jazaeri, Shannon Westin, Anil Sood, Sanghoon Lee
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 5473.
https://doi.org/10.1158/1538-7445.AM2023-5473
Published: 04 April 2023
View articletitled, Abstract 5473: Genomic profiling of chemotherapy-related clonal hematopoiesis in patients with high-grade serous ovarian cancer
Journal Articles

Abstract 2580: Infiltration and spatial distribution of immune cells are associated clinical benefit from Nivolumab and Ipilimumab for previously treated patients with stage IV squamous cell lung cancer: an immune biomarker analysis of Phase III SWOG LungMAP S1400I trial

Free
Edwin Roger Parra, Jiexin Zhang, Mary Redman, Rossana Lazcano, Piubelli Mario, Caddie Laberiano Fernandez, Renganayaki K. Krishna, Shanyu Zhang, Hong Chen, Ganiraju Manyam, Radim Moravec, Ethan Cerami, James Lindsay, Joyce Yu, Roshni Biswas, Stephen Van Nostrand, Dzifa Y. Duose, Jianjun Zhang, Roy Herbst, Gheath Al-Atrash, Kasthuri Kannan, Ignacio I. Wistuba, Scott Gettinger, Lyudmila Bazhenova, Jack Lee, Jianhua Zhang, Cara Haymaker
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 2580.
https://doi.org/10.1158/1538-7445.AM2022-2580
Published: 15 June 2022
View articletitled, Abstract 2580: Infiltration and spatial distribution of immune cells are associated clinical benefit from Nivolumab and Ipilimumab for previously treated patients with stage IV squamous cell lung cancer: an immune biomarker analysis of Phase III SWOG LungMAP S1400I trial
Journal Articles

Abstract 1175: Spatially resolved transcriptomics to understand mechanisms of response to neoadjuvant chemotherapy

Free
Elaine Stur, Sara Corvigno, Mingchu Xu, Ken Chen, Sanghoon Lee, Jinsong Liu, Emilly Ricco, Nicole Fleming, Emine Bayraktar, Daniel Kraushaar, Jianhua Zhang, Anil K. Sood
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 1175.
https://doi.org/10.1158/1538-7445.AM2022-1175
Published: 15 June 2022
View articletitled, Abstract 1175: Spatially resolved transcriptomics to understand mechanisms of response to neoadjuvant chemotherapy
Journal Articles

Abstract 5106: Distinct molecular profiles of serum-derived extracellular vesicles in high-grade serous ovarian cancer

Free
Li Zhao, Shaolin Ma, Nicole D. Fleming, Joseph Celestino, Mark S. Kim, Richard A. Hajek, Nicholas B. Jennings, Erika J. Thompson, Hongli Tang, Shannon N. Westin, Amir A. Jazaeri, Jianhua Zhang, P Andrew Futreal, Anil K. Sood, Sanghoon Lee
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 5106.
https://doi.org/10.1158/1538-7445.AM2022-5106
Published: 15 June 2022
View articletitled, Abstract 5106: Distinct molecular profiles of serum-derived extracellular vesicles in high-grade serous ovarian cancer
Journal Articles

Abstract 5738: Transcriptomic profiles of response to neoadjuvant chemotherapy in patients with high-grade serous ovarian cancer

Free
Sanghoon Lee, Li Zhao, Nicole D. Fleming, Joseph Celestino, Richard A. Hajek, Margaret B. Morgan, Yan Liu, Shannon N. Westin, Amir A. Jazaeri, Jinsong Liu, Jianhua Zhang, P Andrew Futreal, Anil K. Sood
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 5738.
https://doi.org/10.1158/1538-7445.AM2022-5738
Published: 15 June 2022
View articletitled, Abstract 5738: Transcriptomic profiles of response to neoadjuvant chemotherapy in patients with high-grade serous ovarian cancer
Journal Articles

Abstract P5-01-03: Mouse-intraductal (MIND): An in vivo model for studying the underlying mechanisms of DCIS malignancy

Free
Aditi Rastogi, Jerome Lin, Yan Hong, Darlene Limback, Hanan S. Elsarraj, Haleigh Harper, Haley Haines, Hayley Hansford, Michael Ricci, Carolyn Kaufman, Emily Wedlock, Mingchu Xu, Jianhua Zhang, Lisa May, Terri Cusick, Marc Inciardi, Mark Redick, Jason Gatewood, Onalisa Winblad, Allison Aripoli, Ashley Huppe, Christa Balanoff, Jamie Wagner, Amanda Amin, Kelsey E. Larson, Lawrence Ricci, Ossama Tawfik, Hana Razek, Ruby O Meierotto, Rashna Madan, Andrew K. Godwin, Jeffrey Thompson, Susan G. Hilsenbeck, Andy Futreal, Alastair Thompson, E. Shelley Hwang, Fang Fan, Nicholas Navin, Fariba Behbod, Grand Challenge PRECISION Consortium
Journal: Cancer Research
Cancer Res (2022) 82 (4_Supplement): P5-01-03.
https://doi.org/10.1158/1538-7445.SABCS21-P5-01-03
Published: 15 February 2022
View articletitled, Abstract P5-01-03: Mouse-intraductal (MIND): An in vivo model for studying the underlying mechanisms of DCIS malignancy