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Journal Articles

Abstract 78: Detection of gene fusions and exon skipping events in lung FFPE samples with Oncomine Precision Assay on Ion Torrent Genexus࣪ System

Amir Marcovitz, Jeoffrey Schageman, Jian Gu, Stephen Wunsch, David Chi, Paul D. williams, Scott P. Myrand, Fiona C. Hyland, Seth Sadis, Kelli S. Bramlett
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 78.
DOI: https://doi.org/10.1158/1538-7445.AM2022-78
Published: 15 June 2022
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Abstract 2939: Automation meets reliability: Use of Oncomine࣪precision assay on the Genexus࣪system for accurate identification of cancer biomarkers in FFPE and liquid biopsy samples

Thilanka Jayaweera, Nicholas Siepert, Brian Hradecky, Emilia Ostrowska, Iris Casuga, kristy Lea, Priyanka Kshatriya, Jian Gu, Jeff Schageman, Ru Cao, Angie Cheng, Kelli Bramlett
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 2939.
DOI: https://doi.org/10.1158/1538-7445.AM2022-2939
Published: 15 June 2022
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Abstract 195: A focused ultrasound blood brain barrier disruption model to test the influence of tight junction genes to treat brain tumors

Jayashree Iyer, Adam Akkad, Nanyun Tang, Sen Peng, Michael Berens, Frederic Zenhausern, Jian Gu
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 195.
DOI: https://doi.org/10.1158/1538-7445.AM2022-195
Published: 15 June 2022
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Abstract 2984: Building an in vitro blood brain barrier model to test the influence of tight junction gene alleles on disruption by focused ultrasound to treat brain tumors

Jayashree Iyer, Adam Akkad, Nanyun Tang, Michael E. Berens, Frederic Zenhausern, Jian Gu
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2984.
DOI: https://doi.org/10.1158/1538-7445.AM2021-2984
Published: 01 July 2021
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Abstract 3118: Next generation sequencing assay for detection of gene fusions and exon deletion events in tissue and liquid biopsy samples at very low frequency

Rajesh K. Gottimukkala, Fiona C. Hyland, Amir Marcovitz, Jeoffrey Schageman, Varun Bagai, Ru Cao, Paul D. Williams, Scott P. Myrand, Jian Gu, Seth Sadis, Kelli S. Bramlett
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 3118.
DOI: https://doi.org/10.1158/1538-7445.AM2020-3118
Published: 15 August 2020
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Abstract 28: Integrating genomic and transcriptomic data to identify genetic loci associated with breast cancer risk in women of African ancestry

Guochong Jia, Jie Ping, Yaohua Yang, Maureen Sanderson, Qiuyin Cai, Xingyi Guo, William J. Blot, Bingshan Li, Elisa V. Bandera, Manjeet K. Bolla, Montserrat García-Closas, Douglas F. Easton, Mary K. Fadden, Jian Gu, Dezheng Huo, Esther M. John, Kathryn L. Lunetta, Olufunmilayo I. Olopade, Xiang Shu, Melissa A. Troester, Song Yao, Breast Cancer Association Consortium, Andrew F. Olshan, Christine B. Ambrosone, Christopher A. Haiman, Jirong Long, Julie R. Palmer, Wei Zheng
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 28.
DOI: https://doi.org/10.1158/1538-7445.AM2020-28
Published: 15 August 2020
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Abstract 213: Demonstration of the genexus integrated sequencing system with the oncomine precision assay

Jian Gu, Ru Cao, Jeff Schageman, Kris Lea, Priyanka Kshatriya, Amir Marcovitz, Paul Williams, Rasika Sunnadeniya, Varun Bagai, Khalid Hanif, Jose L. Costa, Kelli Bramlett
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 213.
DOI: https://doi.org/10.1158/1538-7445.AM2020-213
Published: 15 August 2020
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Journal Articles

Abstract 215: Oncomineprecision assay - an integrated and automatic next generation sequencing workflow for both FFPE tissue and plasma based cancer research

Ru Cao, Jian Gu, Jeff Schageman, Kris Lea, Priyanka Kshatriya, Amir Marcovitz, Paul Williams, Bo Ding, Khalid Hanif, Kelli Bramlett
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 215.
DOI: https://doi.org/10.1158/1538-7445.AM2020-215
Published: 15 August 2020
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Journal Articles

Abstract 834: Epigenome-wide profiling of DNA methylation in peripheral blood leukocytes and the prognosis of prostate cancer patients in African Americans

Junfeng Xu, Chia-Wen Tsai, Wen-Shin Chang, Da-Tian Bau, Jian Gu
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 834.
DOI: https://doi.org/10.1158/1538-7445.AM2019-834
Published: 01 July 2019
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Abstract 5123: Characterization of genetic mutation spectra and identification of gene amplification and fusion variants in cell-free nucleic acid from cultured cancer cell media and liquid biopsy specimens using Oncomine™ Pan-Cancer Cell-Free Assay

Ru Cao, Kris Lea, Madhu Jasti, Jeff Schageman, Khalid Hanif, Yanchun Li, Jian Gu, Varun Bagai, Priyanka Kshatriya, Harriet Wikman, Sonja Loges, Kelli Bramlett
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 5123.
DOI: https://doi.org/10.1158/1538-7445.AM2019-5123
Published: 01 July 2019
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Journal Articles

Abstract 3332: Genome-wide DNA methylation profiling of peripheral blood leukocytes identifies predictors of aggressive prostate cancer

Yuyan Han, Jia Li, Mutian Zhang, Jeri Kim, Xifeng Wu, Deqiang Sun, Jian Gu
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 3332.
DOI: https://doi.org/10.1158/1538-7445.AM2018-3332
Published: 01 July 2018
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Journal Articles

Abstract 2396: Methylation of subtelomeric repeat D4Z4 in peripheral blood leukocytes is associated with biochemical recurrence in localized prostate cancer patients

Yuyan Han, Jeri Kim, Xifeng Wu, Jian Gu
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 2396.
DOI: https://doi.org/10.1158/1538-7445.AM2017-2396
Published: 01 July 2017
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Abstract 5396: An NGS workflow to detect down to 0.1% allelic frequency in cfDNA for breast and colon cancers

Dalia Dhingra, Richard Chien, Jian Gu, Dumitru Brinza, Ruchi Chaudhary, Kunal Banjara, Yanchun Li, Efren Ballesteros-Villagrana, Kelli Bramlett
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 5396.
DOI: https://doi.org/10.1158/1538-7445.AM2017-5396
Published: 01 July 2017
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Abstract 809: Dietary iron intake, genetic variants in microRNA related iron regulatory pathway genes, and the risk of non-small cell lung cancer

Liren Zhang, Yuanquing Ye, Huakang Tu, Michelle A.t. Hildebrandt, John V. Heymach, Jack A. Roth, Jian Gu, Xifeng Wu
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 809.
DOI: https://doi.org/10.1158/1538-7445.AM2016-809
Published: 15 July 2016
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Abstract 8: Global and targeted metabolomic profiling of colorectal cancer progression

Beatriz Sanchez-Espiridion, Lindsey White, Lopa Mishra, Gottumukkala S. Raju, Scott Kopetz, Jian Gu, Yuanquing Ye, Xifeng Wu, Dong Liang
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 8.
DOI: https://doi.org/10.1158/1538-7445.AM2016-8
Published: 15 July 2016
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Abstract 143: Mutational landscape of colorectal adenomas reveals potential signatures for progression

Shu-Hong Lin, Gottumukkala S. Raju, Chad Huff, Jian Gu, Jiun-Shen Chen, Scott Kopetz, David G. Menter, Ernest Hawk, Lopa Mishra, Yuanquing Ye, Xifeng Wu
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 143.
DOI: https://doi.org/10.1158/1538-7445.AM2016-143
Published: 15 July 2016
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Abstract 1527: Urinary miRNAs as predictors of tumor metastasis in localized patients with clear cell renal cell carcinoma: a pilot study

Xiang Shu, Michelle AT Hildebrandt, Rodolfo Borges dos Reis, Yuanqing Ye, Jian Gu, Christopher G. Wood, Xifeng Wu
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 1527.
DOI: https://doi.org/10.1158/1538-7445.AM2016-1527
Published: 15 July 2016
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Abstract 964: Circulating biomarker miRNA-150 promotes tumor cell proliferation and progression by targeting SRC kinase signaling inhibitor 1 (SRCIN1) in non-small cell lung cancer

Jing Lin, Liren Zhang, Yuanqing Ye, Taro Oba, Emanuela Gentile, Emanuela Gentile, Jing Wang, Yang Zhao, Jian Gu, Ignacio Wistuba, Jack A. Roth, Xifeng Wu, Lin Ji
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 964.
DOI: https://doi.org/10.1158/1538-7445.AM2016-964
Published: 15 July 2016
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Abstract 3959: Detection of somatic mutations at 0.1% frequency from cfDNA in peripheral blood with a multiplex next-generation sequencing assay

Dumitru Brinza, Ann Mongan, Richard Chen, Dalia Dhingra, Jian Gu, Janice Au-Young, Fiona Hyland, Kelli Bramlett
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 3959.
DOI: https://doi.org/10.1158/1538-7445.AM2016-3959
Published: 15 July 2016
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Abstract 2634: Prognostic value of obesity-related genes methylation in localized renal cell carcinoma patients

Julia Mendoza-Perez, Jian Gu, Nizar M. Tannir, Surena Matin, Jose A. Karam, Maosheng Huang, Shu Xiang, David W. Chang, Christopher G. Wood, Luis A. Herrera, Xifeng Wu
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 2634.
DOI: https://doi.org/10.1158/1538-7445.AM2016-2634
Published: 15 July 2016
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