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Jian Carrot-Zhang
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Journal Articles

Abstract LB338: Genome-wide haplotype-specific copy number analysis from clinical targeted tumor sequencing data

Free
Eden Cruikshank, Pooja Chandra, David Ma, Tomin Perea-Chamblee, Patricia Galipeau, Jian Carrot-Zhang, Gavin Ha
Journal: Cancer Research
Cancer Res (2025) 85 (8_Supplement_2): LB338.
https://doi.org/10.1158/1538-7445.AM2025-LB338
Published: 25 April 2025
View articletitled, Abstract LB338: Genome-wide haplotype-specific copy number analysis from clinical targeted tumor sequencing data
Journal Articles

Abstract 3383: Clinical and genomic utility of smoking pack years in a real world cohort

Free
Tejiri E. Agbamu, Kelly Pekala, Xinran Bi, Xuechun Bai, David Ma, Nicholas Pickersgill, Michele Waters, Jian Carrot-Zhang
Journal: Cancer Research
Cancer Res (2025) 85 (8_Supplement_1): 3383.
https://doi.org/10.1158/1538-7445.AM2025-3383
Published: 21 April 2025
View articletitled, Abstract 3383: Clinical and genomic utility of smoking pack years in a real world cohort
Journal Articles

Abstract 7109: Understanding race-specific differences in the predictive performance of computational outcome models for breast cancer

Free
William Asinger, Sarah Eskreis-Winkler, Armaan Kohli, Enrico Moiso, Anika Begum, Mehnaj Ahmed, Andrew Aukerman, Jianjiong Gao, Jian Carrot-Zhang, Arfath Pasha, Hong Zhang, Elizabeth Sutton, Sohrab Shah, Pedram Razavi, Francisco Sanchez-Vega
Journal: Cancer Research
Cancer Res (2025) 85 (8_Supplement_1): 7109.
https://doi.org/10.1158/1538-7445.AM2025-7109
Published: 21 April 2025
View articletitled, Abstract 7109: Understanding race-specific differences in the predictive performance of computational outcome models for breast cancer
Journal Articles

Abstract 6123: Validating cancer modulated allostatic load as a composite biomarker for mortality in patients with cancer

Free
Christopher J. Fong, Kaicheng U, Cheryl Phua, Xuechun Bai, Michele Waters, Tom Fu, Kanika Arora, Tomin Perea-Chamblee, Devika Jutagir, Michael Berger, Nikolaus Schultz, Adam Schoenfeld, Francesca Gany, Justin Jee, Jian Carrot-Zhang
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 6123.
https://doi.org/10.1158/1538-7445.AM2024-6123
Published: 22 March 2024
View articletitled, Abstract 6123: Validating cancer modulated allostatic load as a composite biomarker for mortality in patients with cancer
Journal Articles

Abstract 3892: Systematic generation of a clinicogenomic harmonized oncologic real-world dataset (MSK-CHORD)

Free
Christopher J. Fong, Karl Pichotta, Thinh Tran, Michele Waters, Tom Fu, Mono Pirun, Mirella Altoe, Brooke Mastrogiacomo, Anisha Luthra, Mehnaj Ahmed, Arfath Pasha, Armaan Kohli, Raymond Lim, Tom Pollard, Darin Moore, Benjamin Gross, Avery Wang, Calla Chennault, Ritika Kundra, Ramyasree Madupuri, Ino de Bruijn, Aaron Lisman, Walid K. Chatila, Subhiksha Nandakumar, Anika Begum, Doori Rose, Kenneth L. Kehl, Deborah Schrag, Michael Berger, Jian Carrot-Zhang, Pedram Razavi, Bob Li, Peter Stetson, Nikolaus Schultz, Justin Jee
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 3892.
https://doi.org/10.1158/1538-7445.AM2024-3892
Published: 22 March 2024
View articletitled, Abstract 3892: Systematic generation of a clinicogenomic harmonized oncologic real-world dataset (MSK-CHORD)
Journal Articles

Abstract 4260: Understanding genomic and social determinants of cancer immunotherapy outcome across ancestry

Free
Christopher J. Fong, Michele Waters, Karl Pichotta, Justin Jee, Devika R. Jutagir, David Ma, Tomin Perea-Chamblee, Susie Kim, Kanika Arora, Brooke Mastrogiacomo, Thinh Tran, Steven Maron, Mirella Altoe, Anisha Luthra, Joseph Kholodenko, Arfath Patha, Doori Rose, Michael F. Berger, Gregory J. Riely, Nikolaus Schultz, Sanna Goyert, Adam Schoenfeld, Francesca Gany, Jian Carrot-Zhang
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 4260.
https://doi.org/10.1158/1538-7445.AM2023-4260
Published: 04 April 2023
View articletitled, Abstract 4260: Understanding genomic and social determinants of cancer immunotherapy outcome across ancestry
Journal Articles

Germline Missense Variants in CDC20 Result in Aberrant Mitotic Progression and Familial Cancer

Available to Purchase
Owen J. Chen, Ester Castellsagué, Mohamed Moustafa-Kamal, Javad Nadaf, Barbara Rivera, Somayyeh Fahiminiya, Yilin Wang, Isabelle Gamache, Caterina Pacifico, Lai Jiang, Jian Carrot-Zhang, Leora Witkowski, Albert M. Berghuis, Stefan Schönberger, Dominik Schneider, Morten Hillmer, Susanne Bens, Reiner Siebert, Colin J.R. Stewart, Ziguo Zhang, William C.H. Chao, Celia M.T. Greenwood, David Barford, Marc Tischkowitz, Jacek Majewski, William D. Foulkes, Jose G. Teodoro
Journal: Cancer Research
Cancer Res (2022) 82 (19): 3499–3515.
https://doi.org/10.1158/0008-5472.CAN-21-3956
Published: 04 October 2022
View articletitled, Germline Missense Variants in CDC20 Result in Aberrant Mitotic Progression and Familial Cancer
Open the PDF for Germline Missense Variants in CDC20 Result in Aberrant Mitotic Progression and Familial Cancer in another window
Includes: Supplementary data
Journal Articles

Abstract 1166: Leveraging existing data to identify ancestry-associated features across multiple cancer types

Free
Jian Carrot-Zhang, Justin Newberg, Garrett Frampton, Rameen Beroukhim
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 1166.
https://doi.org/10.1158/1538-7445.AM2022-1166
Published: 15 June 2022
View articletitled, Abstract 1166: Leveraging existing data to identify ancestry-associated features across multiple cancer types
Journal Articles

Abstract 5895: Whole-genome characterization of lung adenocarcinomas lacking alterations in RTK/RAS/RAF/MAPK pathway

Free
Jian Carrot-Zhang, Siddhartha Devarakonda, Nicolas Robine, Xiaotong Yao, Tiago C. Silva, Jeff Damrauer, Aditya Deshpande, Ming-Sound Tsao, Christina Yao, Chris Wong, Lisui Bao, Hyo Young Choi, Ina Felau, Jean C. Zenklusen, Gordon Robertson, Tuan Trieua, Wei-Wei Liang, Meng Zhou, Esther Rheinbay, Neil Hayes, Ekta Khurana, Li Ding, Peter Laird, Olivier Elemento, John Weinstein, David Kwiatkowski, Chris Benz, Josh Stuart, Lixing Yang, Mauro Castro, William Travis, Katherine Hoadley, Ben Berman, TCGA Analysis Network, Matthew Meyerson, Ramaswamy Govindan, Marcin Imielinski
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 5895.
https://doi.org/10.1158/1538-7445.AM2020-5895
Published: 15 August 2020
View articletitled, Abstract 5895: Whole-genome characterization of lung adenocarcinomas lacking alterations in RTK/RAS/RAF/MAPK pathway
Journal Articles

Abstract 6670: Combined signals from tumor and immune cells predict outcomes of checkpoint inhibition in melanoma

Free
Samuel S. Freeman, Moshe Sade-Feldman, Jaegil Kim, Chip Stewart, Arvind Ravi, Monica Arniella, Keren Yizhak, Ignaty Leshchiner, Liudmila Elagina, Oliver Spiro, Dimitri Livitz, Daniel Rosebrock, François Aguet, Jian Carrot-Zhang, Anna Gonye, Gavin Ha, Ziao Lin, Jonathan H. Chen, Dennie T. Frederick, Michal Barzily-Rokni, Marc R. Hammond, Hans Vitzthum, Shauna M. Blackmon, Yunxin J. Jiao, Donald P. Lawrence, Lyn M. Duncan, Anat Stemmer-Rachamimov, Jennifer A. Wargo, Keith T. Flaherty, Genevieve M. Boland, Ryan J. Sullivan, Matthew Meyerson, Gad Getz, Nir Hacohen
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 6670.
https://doi.org/10.1158/1538-7445.AM2020-6670
Published: 15 August 2020
View articletitled, Abstract 6670: Combined signals from tumor and immune cells predict outcomes of checkpoint inhibition in melanoma
Journal Articles

Abstract 1227: Somatic genome alterations in cancer as compared to inferred patient ancestry

Free
Caitlin F. Connelly, Jian Carrot-Zhang, Philip J. Stephens, Garrett M. Frampton
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 1227.
https://doi.org/10.1158/1538-7445.AM2018-1227
Published: 01 July 2018
View articletitled, Abstract 1227: Somatic genome alterations in cancer as compared to inferred patient ancestry
Journal Articles

Abstract LB-89: Germ-line and somatic SMARCA4 mutations characterize small cell carcinoma of the ovary, hypercalcemic type

Free
Leora Witkowski, Jian Carrot-Zhang, Steffen Albrecht, Nancy Hamel, Eva Tomiak, David Grynspan, Emmanouil Saloustros, Catherine Gilpin, Rachel Silva-Smith, François Plourde, Barbara Rivera, Ester Castellsagué, Mona Wu, Somayyeh Fahiminiya, Javad Nadaf, Avi Saskin, Madeleine Arseneault, Rouzan G. Karabakhtsian, Elizabeth A. Reilly, Frederick R. Ueland, Anna Margiolaki, Kitty Pavlakis, Sharon M. Castellino, Janez Lamovec, Lawrence M. Roth, Thomas M. Ulbright, Tracey Bender, Michel Longy, Andrew Berchuck, Marc Tischkowitz, Reiner Siebert, Inga Nagel, Vassilis Georgoulias, Colin J.r. Stewart, Glenn McCluggage, Jocelyne Arseneau, Blaise A. Clarke, Yasser Riazalhosseini, Martin Hasselblatt, Jacek Majewski, William D. Foulkes
Journal: Cancer Research
Cancer Res (2014) 74 (19_Supplement): LB-89.
https://doi.org/10.1158/1538-7445.AM2014-LB-89
Published: 01 October 2014
View articletitled, Abstract LB-89: Germ-line and somatic SMARCA4 mutations characterize small cell carcinoma of the ovary, hypercalcemic type