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Jeffrey R. Marks
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Journal Articles

Single Cell Expression Analysis of Ductal Carcinoma in Situ Identifies Complex Genotypic-Phenotypic Relationships Altering Epithelial Composition

Xiaodi Qin, Siri H. Strand, Marissa R. Lee, Aashrith Saraswathibhatla, David G.P. van IJzendoorn, ChunFang Zhu, Sujay Vennam, Sushama Varma, Allison Hall, Rachel E. Factor, Lorraine King, Lunden Simpson, Xiaoke Luo, Graham A. Colditz, Shu Jiang, Ovijit Chaudhuri, E. Shelley Hwang, Jeffrey R. Marks, Kouros Owzar, Robert B. West
Journal: Cancer Research
Cancer Res (2025)
https://doi.org/10.1158/0008-5472.CAN-24-3023
Published: 18 March 2025
View article titled, Single Cell Expression Analysis of Ductal Carcinoma in Situ Identifies Complex Genotypic-Phenotypic Relationships Altering Epithelial Composition
Open the PDF for Single Cell Expression Analysis of Ductal Carcinoma in Situ Identifies Complex Genotypic-Phenotypic Relationships Altering Epithelial Composition in another window
Includes: Supplementary data
Journal Articles

Genomic Characterization of High-Grade Serous Ovarian Carcinoma Reveals Distinct Somatic Features in Black Individuals

Katherine A. Lawson-Michod, Jeffrey R. Marks, Lindsay J. Collin, David A. Nix, Natalie R. Davidson, Chad D. Huff, Yao Yu, Aaron Atkinson, Courtney E. Johnson, Lucas A. Salas, Lauren C. Peres, Casey S. Greene, Joellen M. Schildkraut, Jennifer A. Doherty
Journal: Cancer Research
Cancer Res (2025)
https://doi.org/10.1158/0008-5472.CAN-24-1879
Published: 10 March 2025
View article titled, Genomic Characterization of High-Grade Serous Ovarian Carcinoma Reveals Distinct Somatic Features in Black Individuals
Open the PDF for Genomic Characterization of High-Grade Serous Ovarian Carcinoma Reveals Distinct Somatic Features in Black Individuals in another window
Includes: Supplementary data
Journal Articles

Abstract 6127: Characterization of germline and somatic homologous recombination deficiency features in high-grade serous ovarian cancer among Black individuals

Katherine Lawson-Michod, Mollie E. Barnard, Natalie Davidson, Lindsay J. Collin, Courtney Johnson, Lucas A. Salas, Casey Greene, Jeffrey R. Marks, Lauren Peres, Joellen M. Schildkraut, Jennifer A. Doherty
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 6127.
https://doi.org/10.1158/1538-7445.AM2024-6127
Published: 22 March 2024
View article titled, Abstract 6127: Characterization of germline and somatic homologous recombination deficiency features in high-grade serous ovarian cancer among Black individuals
Journal Articles

Abstract 4829: Pre-diagnostic comorbid conditions and survival among black women with ovarian cancer

Alicia Richards, Courtney E. Johnson, Anthony J. Alberg, Elisa V. Bandera, Melissa Bondy, Michele L. Cote, Theresa A. Hastert, Kristen Haller, Jeffrey R. Marks, Edward S. Peters, Paul D. Terry, Andrew B. Lawson, Joellen M. Schildkraut, Lauren C. Peres
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 4829.
https://doi.org/10.1158/1538-7445.AM2024-4829
Published: 22 March 2024
View article titled, Abstract 4829: Pre-diagnostic comorbid conditions and survival among black women with ovarian cancer
Journal Articles

Abstract A038: Evaluating DCIS progression: A comparative analysis of CNA predictive power derived from lpWGS and WES data

Manasa Iyer, Diego Mallo, Carlo C. Maley, Angelo Fortunato, Luis Cisneros, Lorraine M. King, Marc D. Ryser, Joseph Y. Lo, Allison Hall, Jeffrey R. Marks, Shelley Hwang
Journal: Cancer Research
Cancer Res (2024) 84 (3_Supplement_2): A038.
https://doi.org/10.1158/1538-7445.CANEVOL23-A038
Published: 01 February 2024
View article titled, Abstract A038: Evaluating DCIS progression: A comparative analysis of CNA predictive power derived from lpWGS and WES data
Journal Articles

Abstract 5933: Trimodal molecular analysis in single cells of a primary breast cancer cohort with ResolveOME ™ amplification

Jon S. Zawistowski, Isai Salas-Gonzalez, Tia A. Tate, Tatiana V. Morozova, Katherine Kennedy, Durga M. Arvapalli, Swetha D. Velivela, Jamie E. Remington, Josh Croteau, Kevin Taylor, Jeff G. Blackinton, Victor J. Weigman, Jeffrey R. Marks, Eun-Sil Shelley Hwang, Gary L. Harton, Jay A. West
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 5933.
https://doi.org/10.1158/1538-7445.AM2023-5933
Published: 04 April 2023
View article titled, Abstract 5933: Trimodal molecular analysis in single cells of a primary breast cancer cohort with ResolveOME ™ amplification
Journal Articles

Abstract 5108: Copy number analysis of pure DCIS and association with recurrence

Ahmed A. Ahmed, Maria Roman-Escorza, Tycho Bismeijer, Michael Sheinman, Vandna Shah, Rana Shami, Jeffrey R. Marks, Lorraine M. King, Anargyros Megalios, Lindy L. Visser, Marlous Hoogstraat, Helen R. Davies, Tapsi Kumar, Deborah Collyar, Hilary Stobart, Sarah Pinder, Nicholas N. Navin, Andrew Futreal, Serena Nik-Zainal, E. Shelley Hwang, Lodewyk F. Wessels, Esther H. Lips, Alastair Thompson, Jelle Wesseling, Elinor J. Sawyer
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 5108.
https://doi.org/10.1158/1538-7445.AM2022-5108
Published: 15 June 2022
View article titled, Abstract 5108: Copy number analysis of pure DCIS and association with recurrence
Journal Articles

Abstract GS4-07: The Breast PreCancer Atlas DCIS genomic signatures define biology and correlate with clinical outcomes: An analysis of TBCRC 038 and RAHBT cohorts

Siri H Strand, Belén Rivero-Gutiérrez, Kathleen E Houlahan, Jose A Seoane, Lorraine M King, Tyler Risom, Lunden Simpson, Sujay Vennam, Aziz Khan, Timothy Hardman, Bryan E Harmon, Fergus J Couch, Kristalyn Gallagher, Mark Kilgore, Shi Wei, Angela DeMichele, Tari King, Priscilla F McAuliffe, Julie Nangia, Joanna Lee, Jennifer Tseng, Anna Maria Storniolo, Alastair Thompson, Gaorav Gupta, Robyn Burns, Deborah J Veis, Katherine DeSchryver, Chunfang Zhu, Magdalena Matusiak, Jason Wang, Shirley X Zhu, Jen Tappenden, Daisy Yi Ding, Dadong Zhang, Jingqin Luo, Shu Jiang, Sushama Varma, Cody Straub, Sucheta Srivastava, Christina Curtis, Rob Tibshirani, Robert Michael Angelo, Allison Hall, Kouros Owzar, Kornelia Polyak, Carlo Maley, Jeffrey R Marks, Graham A Colditz, E Shelley Hwang, Robert B West
Journal: Cancer Research
Cancer Res (2022) 82 (4_Supplement): GS4-07.
https://doi.org/10.1158/1538-7445.SABCS21-GS4-07
Published: 15 February 2022
View article titled, Abstract GS4-07: The Breast PreCancer Atlas DCIS genomic signatures define biology and correlate with clinical outcomes: An analysis of TBCRC 038 and RAHBT cohorts
Journal Articles

Abstract P1-22-05: Identifying predictors of invasive recurrence based on molecular profiles of DCIS lesions

Tycho Bismeijer, Ahmed A Ahmed, Michael Sheinman, Maria Roman-Escorza, Vandna Shah, Jeffrey R Marks, Lorraine M King, Anargyros Megalios, Lindy L Visser, Marlous Hoogstraat, Helen R Davies, Tapsi Kumar, Deborah Collyar, Hilary Stobart, Nicholas N Navin, Andrew Futreal, Serena Nik-Zainal, Shelley Hwang, Esther H Lips, Alastair Thompson, Lodewyk FA Wessels, Elinor J Sawyer, Jelle Wesseling, Grand Challenge PRECISION Consortium
Journal: Cancer Research
Cancer Res (2022) 82 (4_Supplement): P1-22-05.
https://doi.org/10.1158/1538-7445.SABCS21-P1-22-05
Published: 15 February 2022
View article titled, Abstract P1-22-05: Identifying predictors of invasive recurrence based on molecular profiles of DCIS lesions
Journal Articles

Abstract PR02: Inferring the evolutionary dynamics of ductal carcinoma in situ through multi-regional sequencing and mathematical modeling

Marc D. Ryser, Inmaculada C. Sorribes, Matthew Greenwald, Ethan Wu, Allison Hall, Diego Mallo, Lorraine M. King, Timothy Hardman, Lunden Simpson, Carlo C. Maley, Jeffrey R. Marks, Darryl Shibata, E. Shelley Hwang
Journal: Cancer Research
Cancer Res (2020) 80 (21_Supplement): PR02.
https://doi.org/10.1158/1538-7445.TUMHET2020-PR02
Published: 03 November 2020
View article titled, Abstract PR02: Inferring the evolutionary dynamics of ductal carcinoma in situ through multi-regional sequencing and mathematical modeling
Journal Articles

Abstract 2502: Genetic and functional heterogeneity of DCIS as predictors of invasive cancer

Angelo Fortunato, Diego Mallo, Lorraine King, Timothy Hardman, Allison Hall, Jeffrey R. Marks, Shelley Shelley Hwang, Carlo C. Maley
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 2502.
https://doi.org/10.1158/1538-7445.AM2020-2502
Published: 15 August 2020
View article titled, Abstract 2502: Genetic and functional heterogeneity of DCIS as predictors of invasive cancer
Journal Articles

Abstract 2683: Ductal carcinoma in situ is a multiclonal disease

Marc D. Ryser, Inmaculada C. Sorribes, Matthew Greenwald, Allison Hall, Diego Mallo, Lorraine M. King, Timothy Hardman, Lunden Simpson, Carlo C. Maley, Jeffrey R. Marks, Darryl Shibata, E. Shelley Hwang
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 2683.
https://doi.org/10.1158/1538-7445.AM2020-2683
Published: 15 August 2020
View article titled, Abstract 2683: Ductal carcinoma in situ is a multiclonal disease
Journal Articles

Abstract P1-21-07: The Patient-reported Outcomes after Routine Treatment of Atypical Lesions (PORTAL) study: Pain, psychosocial wellbeing, and quality of life among women undergoing guideline concordant care for DCIS vs. active surveillance for in situ and atypical lesions

Shoshana M Rosenberg, Laura H Hendrix, Kristin L Schreiber, Alastair M Thompson, Isabelle Bedrosian, Kevin S Hughes, Thomas Lynch, Desiree Basila, Deborah E Collyar, Elizabeth S Frank, Sonja Darai, Conor Lanahan, Jeffrey R Marks, Jennifer K Plichta, Terry Hyslop, Ann H Partridge, E. Shelley Hwang
Journal: Cancer Research
Cancer Res (2020) 80 (4_Supplement): P1-21-07.
https://doi.org/10.1158/1538-7445.SABCS19-P1-21-07
Published: 15 February 2020
View article titled, Abstract P1-21-07: The Patient-reported Outcomes after Routine Treatment of Atypical Lesions (PORTAL) study: Pain, psychosocial wellbeing, and quality of life among women undergoing guideline concordant care for DCIS vs. active surveillance for in situ and atypical lesions
Journal Articles

Abstract P2-10-18: Deciphering racial disparities in breast cancer collagen reorganization by targeted extracellular matrix proteomics

Peggi M Angel, Janet Saunders, Heather Jensen-Smith, Evelyn Bruner, Marvella E. Ford, Savanna Berkhiser, Baylye Boxall, Jennifer Bethard, Lauren E. Ball, Elizabeth S. Yeh, Michael A. Hollingsworth, Anand S. Mehta, Jeffrey R. Marks, Harikrishna Nakshatri, Richard R. Drake
Journal: Cancer Research
Cancer Res (2020) 80 (4_Supplement): P2-10-18.
https://doi.org/10.1158/1538-7445.SABCS19-P2-10-18
Published: 15 February 2020
View article titled, Abstract P2-10-18: Deciphering racial disparities in breast cancer collagen reorganization by targeted extracellular matrix proteomics
Journal Articles

Expression of Long Noncoding RNA YIYA Promotes Glycolysis in Breast Cancer

Zhen Xing, Yanyan Zhang, Ke Liang, Liang Yan, Yu Xiang, Chunlai Li, Qingsong Hu, Feng Jin, Vasanta Putluri, Nagireddy Putluri, Cristian Coarfa, Arun Sreekumar, Peter K. Park, Tina K. Nguyen, Shouyu Wang, Jianwei Zhou, Yan Zhou, Jeffrey R. Marks, David H. Hawke, Mien-Chie Hung, Liuqing Yang, Leng Han, Haoqiang Ying, Chunru Lin
Journal: Cancer Research
Cancer Res (2018) 78 (16): 4524–4532.
https://doi.org/10.1158/0008-5472.CAN-17-0385
Published: 14 August 2018
View article titled, Expression of Long Noncoding RNA <em>YIYA</em> Promotes Glycolysis in Breast Cancer
Open the PDF for Expression of Long Noncoding RNA <em>YIYA</em> Promotes Glycolysis in Breast Cancer in another window
Includes: Supplementary data
Journal Articles

Abstract 2631: Cancer associated macrophage-like (CAMLs) cells in blood predict progression and survival for all stages of solid tumors

Daniel L. Adams, Steven H. Lin, R. Katherine Alpaugh, Thai Ho, Jeffrey R. Marks, Stuart S. Martin, Susan Tsai, Saranya Chumsri, Cha-Mei Tang, Massimo Cristofanilli, Raymond Bergan
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 2631.
https://doi.org/10.1158/1538-7445.AM2018-2631
Published: 01 July 2018
View article titled, Abstract 2631: Cancer associated macrophage-like (CAMLs) cells in blood predict progression and survival for all stages of solid tumors
Journal Articles

Abstract 5318: High-grade serous ovarian cancer DNA methylation and survival in African-American women

Lucas A. Salas, Lauren C. Peres, Sarah E. Abbott, Casey S. Greene, Jeffrey R. Marks, Anthony J. Alberg, Elisa V. Bandera, Jill S. Barnholtz-Sloan, Ann G. Schwartz, Michele L. Cote, Patricia G. Moorman, Ellen M. Funkhouser, Edward S. Peters, Melissa L. Bondy, Paul D. Terry, Jennifer A. Doherty, Brock C. Christensen, Joellen M. Schildkraut
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 5318.
https://doi.org/10.1158/1538-7445.AM2018-5318
Published: 01 July 2018
View article titled, Abstract 5318: High-grade serous ovarian cancer DNA methylation and survival in African-American women
Journal Articles

Abstract 3798: Multiplex phenotyping of circulating cancer associated macrophage-like cells in patients with solid tumors

Daniel L. Adams, R Katherine Alpaugh, Thai H. Ho, Steven H. Lin, Jeffrey R. Marks, Raymond Bergan, Stuart S. Martin, Saranya Chumsri, Cha-Mei Tang, Massimo Cristofanilli
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 3798.
https://doi.org/10.1158/1538-7445.AM2017-3798
Published: 01 July 2017
View article titled, Abstract 3798: Multiplex phenotyping of circulating cancer associated macrophage-like cells in patients with solid tumors
Journal Articles

Abstract 778: Identifying, subtyping and classifying tumor associated circulating endothelial cells in patients with solid tumors

Daniel L. Adams, R. Katherine Alpaugh, Steven H. Lin, Jeffrey R. Marks, Raymond Bergan, Stuart S. Martin, Sarany Chumsri, Massimo Cristofanilli, Cha-Mei Tang, Steingrimur Stefansson
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 778.
https://doi.org/10.1158/1538-7445.AM2017-778
Published: 01 July 2017
View article titled, Abstract 778: Identifying, subtyping and classifying tumor associated circulating endothelial cells in patients with solid tumors
Journal Articles

Abstract 3407: Gene expression subtypes of high grade serous ovarian cancer in African American women

Jennifer A. Doherty, Casey S. Greene, James E. Rudd, Laura J. Tafe, Anthony J. Alberg, Elisa V. Bandera, Jill Barnholtz-Sloan, Melissa Bondy, Michele L. Cote, Ellen Funkhouser, Patricia G. Moorman, Edward S. Peters, Ann G. Schwartz, Paul Terry, Rex Bentley, Andrew Berchuck, Jeffrey R. Marks, Joellen M. Schildkraut
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 3407.
https://doi.org/10.1158/1538-7445.AM2016-3407
Published: 15 July 2016
View article titled, Abstract 3407: Gene expression subtypes of high grade serous ovarian cancer in African American women