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James X. Sun
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Journal Articles

Abstract 417: Comparative analysis of clinically validated NGS-based assays reveals high concordance across short variants

Ninad P. Dewal, Joel Skoletsky, Wai-Ki Yip, Caitlin Patriquin, Yuting He, Jeffrey S. Ross, Vincent A. Miller, Philip J. Stephens, Christine Burns, Christine Vietz, Yali Li, Colin Pritchard, James X. Sun
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 417.
DOI: https://doi.org/10.1158/1538-7445.AM2018-417
Published: 01 July 2018
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Journal Articles

Abstract 4757: A clinically validated comprehensive companion diagnostic platform for care of patients with advanced cancer

James X. Sun, Yali Li, Coren Milbury, Joel Skoletsky, Christine Burns, Wai-ki Yip, Jun Luo, Ninad Dewal, Adrienne Johnson, Kyle Gowen, Jing Tong, Yuting He, Jie He, Pei Ma, Jared White, Steve Roels, John Truesdell, Eric Peters, Houston Gilbert, Charlie Wu, Erica Schleifman, Johannes Noe, Carl Barrett, Kenneth Thress, Suzanne Jenkins, Julia Elvin, Geoff Otto, Doron Lipson, Jeffrey Ross, Vincent Miller, Philip Stephens, Michael Doherty, Christine Vietz
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 4757.
DOI: https://doi.org/10.1158/1538-7445.AM2018-4757
Published: 01 July 2018
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Journal Articles

Abstract 1607: An ERBB2 follow-on companion diagnostic for clinical care of patients with breast cancer

Wai-ki Yip, Joel Skoletsky, Pei Ma, Jun Luo, Coren Milbury, Christine Burns, John Truesdell, Julia Elvin, Geoff Otto, Doron Lipson, Jeffrey Ross, Vincent Miller, Philip Stephens, Michael Doherty, Christine Vietz, James X. Sun, Yali Li
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 1607.
DOI: https://doi.org/10.1158/1538-7445.AM2018-1607
Published: 01 July 2018
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Journal Articles

Abstract 4544: A validated diagnostic assay for identifying ovarian cancer patients with deleterious BRCA mutations and high genomic loss of heterozygosity (LOH)

James X. Sun, Kevin Lin, Yali Li, Kyle Gowen, Yuting He, Coren Milbury, Christine Burns, Jun Luo, Steve Roels, Murtaza Mehdi, John Truesdell, Pei Ma, Lakshman Ramamurthy, Christine Vietz, Jeri Beltman, Thomas Harding, Doron Lipson, Jeffrey Ross, Vincent Miller, Philip Stephens, Michael Doherty, Julia Elvin
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 4544.
DOI: https://doi.org/10.1158/1538-7445.AM2018-4544
Published: 01 July 2018
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Journal Articles

Abstract 3394: CGP identifies largely non-overlapping high tumor mutational burden and HRD genomic alterations in 721 clinically advanced prostate acinar adenocarcinoma cases

Ninad Dewal, Yuting He, Richard J. Lee, Alexa B. Schrock, Jon Chung, Christopher Hoimes, Zachary R. Chalmers, Garrett M. Frampton, James X. Sun, Primo N. Lara, Neeraj Agrawal, Paul Matthew, Philip J. Stephens, Vincent A. Miller, Jeffrey S. Ross, Siraj M. Ali
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 3394.
DOI: https://doi.org/10.1158/1538-7445.AM2017-3394
Published: 01 July 2017
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Journal Articles

Genomic Profiling of a Large Set of Diverse Pediatric Cancers Identifies Known and Novel Mutations across Tumor Spectra

Juliann Chmielecki, Mark Bailey, Jie He, Julia Elvin, Jo-Anne Vergilio, Shakti Ramkissoon, James Suh, Garrett M. Frampton, James X. Sun, Samantha Morley, Daniel Spritz, Siraj Ali, Laurie Gay, Rachel L. Erlich, Jeffrey S. Ross, Joana Buxhaku, Hilary Davies, Vinny Faso, Alexis Germain, Blair Glanville, Vincent A. Miller, Philip J. Stephens, Katherine A. Janeway, John M. Maris, Soheil Meshinchi, Trevor J. Pugh, Jack F. Shern, Doron Lipson
Journal: Cancer Research
Series: Author Choice
Cancer Res (2017) 77 (2): 509–519.
DOI: https://doi.org/10.1158/0008-5472.CAN-16-1106
Published: 16 January 2017
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Includes: Supplementary data
Journal Articles

Abstract 4927: Next-generation sequencing enables new approach to molecular cytogenetics

Jie He, Jeffrey Gardner, James X. Sun, Omar Abdel-Wahab, Andrew M. Intlekofer, Michelle K. Nahas, Jo-Anne Vergilio, Jeffery S. Ross, Roman Yelenskey, Ross Levine, Geoff Otto, Doron Lipson, Vincent Miller, Philip Stephens
Journal: Cancer Research
Cancer Res (2015) 75 (15_Supplement): 4927.
DOI: https://doi.org/10.1158/1538-7445.AM2015-4927
Published: 01 August 2015
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Abstract 611: Exploratory analyses suggest ovarian tumors with somatic or germline loss of function mutations in BRCA1 or BRCA2 are biologically similar and sensitive to PARP inhibition

Brian Dougherty, Zhongwu Lai, Jonathan A. Ledermann, Jane D. Robertson, Tony W. Ho, Wenting Wu, Darren R. Hodgson, Maria C M Orr, Mark J. O'Connor, Matthew J. Hawryluk, Timothy A. Brennan, Roman Yelensky, James X. Sun, J Carl Barrett
Journal: Cancer Research
Cancer Res (2015) 75 (15_Supplement): 611.
DOI: https://doi.org/10.1158/1538-7445.AM2015-611
Published: 01 August 2015
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Journal Articles

Abstract 1893: A computational method for somatic versus germline variant status determination from targeted next-generation sequencing of clinical cancer specimens without a matched normal control

James X. Sun, Garrett Frampton, Kai Wang, Jeffrey S. Ross, Vincent A. Miller, Philip J. Stephens, Doron Lipson, Roman Yelensky
Journal: Cancer Research
Cancer Res (2014) 74 (19_Supplement): 1893.
DOI: https://doi.org/10.1158/1538-7445.AM2014-1893
Published: 01 October 2014
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