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J. Zachary Sanborn
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Journal Articles

Abstract 2522: RNA rescue somatic mutations and RNA editing in esophageal cancer

Amie J. Radenbaugh, J Zachary Sanborn, Yulia Newton, Charlie Vaske, Katherine Van Loon, Eric Collisson
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 2522.
https://doi.org/10.1158/1538-7445.AM2019-2522
Published: 01 July 2019
View article titled, Abstract 2522: RNA rescue somatic mutations and RNA editing in esophageal cancer
Journal Articles

Abstract 2253: Identifying pathogenic germline variants in 1,172 cancer patients utilizing a novel variant phasing tool and strict public database curation

Amanda Polley, Charles Vaske, Steve Benz, Patrick Soon-Shiong, Shahrooz Rabizadeh, J Zachary Sanborn
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 2253.
https://doi.org/10.1158/1538-7445.AM2018-2253
Published: 01 July 2018
View article titled, Abstract 2253: Identifying pathogenic germline variants in 1,172 cancer patients utilizing a novel variant phasing tool and strict public database curation
Journal Articles

Abstract 778: Potential drug targets for adenoid cystic carcinoma elucidated by proteogenomic analysis

Sheeno P. Thyparambil, Yeoun Jin Kim, Andrew G. Chambers, Dongyao Yan, Shankar Sellappan, Andrew J. Sedgewick, Yulia Newton, J Zachary Sanborn, Charles J. Vaske, Stephen C. Benz, Fabiola Cecchi, Hyunseok Kang, Todd A. Hembrough
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 778.
https://doi.org/10.1158/1538-7445.AM2018-778
Published: 01 July 2018
View article titled, Abstract 778: Potential drug targets for adenoid cystic carcinoma elucidated by proteogenomic analysis
Journal Articles

Abstract 5725: Systematic identification of tumour-specific neoantigens(by whole-genome sequencing) and correlation between tumour neoantigen burden, PD-L1 expression and immune infiltrates in 158Asian colorectal cancers

Si-Lin Koo, Joe Poh Sheng Yeong, Andy Nguyen, Clarinda Wei Ling Chua, J Zachary Sanborn, Steve Benz, Wah Siew Tan, Choong Leong Tang, Su Yan, Min Hoe Chew, Brian Goh, Chung Yip Chan, Xiao Qing Koh, Alexander Lezhava, Tony Kiat Hon Lim, Shahrooz Rabizadeh, Anders Skanderup, Iain Beehuat Tan
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 5725.
https://doi.org/10.1158/1538-7445.AM2018-5725
Published: 01 July 2018
View article titled, Abstract 5725: Systematic identification of tumour-specific neoantigens(by whole-genome sequencing) and correlation between tumour neoantigen burden, PD-L1 expression and immune infiltrates in 158Asian colorectal cancers
Journal Articles

Abstract 3888: The NantOmics Pharmacogenomics Test: An integrative panomic approach to pharmacogenomics screening

Camille Schwartz, John Little, Charles Vaske, Stephen Benz, Patrick Soon-Shiong, Shahrooz Rabizadeh, J. Zachary Sanborn
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 3888.
https://doi.org/10.1158/1538-7445.AM2018-3888
Published: 01 July 2018
View article titled, Abstract 3888: The NantOmics Pharmacogenomics Test: An integrative panomic approach to pharmacogenomics screening
Journal Articles

Abstract 5693: Tumor whole-transcriptome sequencing and multiplex immunohistochemistry of immune cell populations in 158 Asian colorectal cancers

Clarinda Wei Chua, Engin Cukuroglu, Elisa Fontana, Si Lin Koo, Joe Poh Yeong, Andy Nguyen, J. Zachary Sanborn, Steve Benz, Emile John Tan, Ronnie Mathew, Ee-Lin Toh, Sarah Boon Ng, Tony Kiat Lim, Anders Jacobsen Skanderup, Shahrooz Rabizadeh, Anguraj Sadanandam, Jonathan Göke, Iain Bee Tan
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 5693.
https://doi.org/10.1158/1538-7445.AM2018-5693
Published: 01 July 2018
View article titled, Abstract 5693: Tumor whole-transcriptome sequencing and multiplex immunohistochemistry of immune cell populations in 158 Asian colorectal cancers
Journal Articles

Abstract 640: Subsets of HLA alleles are capable of binding neoantigens derived from mutations within cancer driving genes such as KRAS and EGFR

Andrew Nguyen, J Zachary Sanborn, Charles J. Vaske, Shahrooz Rabizadeh, Kayvan Niazi, Patrick Soon-Shiong, Steve Benz
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 640.
https://doi.org/10.1158/1538-7445.AM2017-640
Published: 01 July 2017
View article titled, Abstract 640: Subsets of HLA alleles are capable of binding neoantigens derived from mutations within cancer driving genes such as KRAS and EGFR
Journal Articles

Abstract 4512: High-throughput identification of neoepitopes for the development of patient-specific cancer immunotherapies

Andrew Nguyen, J Zachary Sanborn, Charles J. Vaske, Shahrooz Rabizadeh, Kayvan Niazi, Patrick Soon-Shiong, Steven C. Benz
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 4512.
https://doi.org/10.1158/1538-7445.AM2016-4512
Published: 15 July 2016
View article titled, Abstract 4512: High-throughput identification of neoepitopes for the development of patient-specific cancer immunotherapies
Journal Articles

Double Minute Chromosomes in Glioblastoma Multiforme Are Revealed by Precise Reconstruction of Oncogenic Amplicons

J. Zachary Sanborn, Sofie R. Salama, Mia Grifford, Cameron W. Brennan, Tom Mikkelsen, Suresh Jhanwar, Sol Katzman, Lynda Chin, David Haussler
Journal: Cancer Research
Cancer Res (2013) 73 (19): 6036–6045.
https://doi.org/10.1158/0008-5472.CAN-13-0186
Published: 01 October 2013
View article titled, Double Minute Chromosomes in Glioblastoma Multiforme Are Revealed by Precise Reconstruction of Oncogenic Amplicons
Open the PDF for Double Minute Chromosomes in Glioblastoma Multiforme Are Revealed by Precise Reconstruction of Oncogenic Amplicons in another window
Includes: Supplementary data
Journal Articles

Abstract 4985: The UCSC Cancer Genomics Browser

Jingchun Zhu, J. Zachary Sanborn, Stephen C. Benz, Brian Craft, Christopher Szeto, Kord M. Kober, Mary Goldman, Laurence Meyer, Charles Vaske, Eric Collisson, Joshua Stuart, David Haussler
Journal: Cancer Research
Cancer Res (2011) 71 (8_Supplement): 4985.
https://doi.org/10.1158/1538-7445.AM2011-4985
Published: 15 April 2011
View article titled, Abstract 4985: The UCSC Cancer Genomics Browser
Journal Articles

Abstract 2015: Patient-specific pathway analysis using DIGMA identifies key activities in multiple cancers

Stephen Benz, Charles Vaske, J. Zachary Sanborn, Joshua Stuart, David Haussler
Journal: Cancer Research
Cancer Res (2010) 70 (8_Supplement): 2015.
https://doi.org/10.1158/1538-7445.AM10-2015
Published: 15 April 2010
View article titled, Abstract 2015: Patient-specific pathway analysis using DIGMA identifies key activities in multiple cancers
Journal Articles

Abstract 2001: Non-negative matrix factorization (NMF) as a clinical classifier: An example with chemotherapy response in ovarian cancer

Szeto Christopher, Stephen Benz, Charles Vaske, J. Zachary Sanborn, Jing Zhu, Joshua Stuart, David Haussler
Journal: Cancer Research
Cancer Res (2010) 70 (8_Supplement): 2001.
https://doi.org/10.1158/1538-7445.AM10-2001
Published: 15 April 2010
View article titled, Abstract 2001: Non-negative matrix factorization (NMF) as a clinical classifier: An example with chemotherapy response in ovarian cancer
Journal Articles

Abstract #1410: Identification of distinct global Copy Number Alteration signatures in different human cancer types and mouse models with the UCSC Cancer Genomics Browser

Ting Wang, Christopher Szeto, Jingchu Zhu, J. Zachary Sanborn, Stephen Benz, David Haussler
Journal: Cancer Research
Cancer Res (2009) 69 (9_Supplement): 1410.
Published: 01 May 2009
View article titled, Abstract #1410: Identification of distinct global Copy Number Alteration signatures in different human cancer types and mouse models with the UCSC Cancer Genomics Browser