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Journal Articles

Abstract LB341: A meta-analysis of cancer neoantigens curated from the literature

Free
Zeynep Kosaloglu-Yalcin, Nina Blazeska, Hannah Carter, Morten Nielsen, Stephen Schoenberger, Alessandro Sette, Bjoern Peters
Journal: Cancer Research
Cancer Res (2025) 85 (8_Supplement_2): LB341.
https://doi.org/10.1158/1538-7445.AM2025-LB341
Published: 25 April 2025
View articletitled, Abstract LB341: A meta-analysis of cancer neoantigens curated from the literature
Journal Articles

Abstract 4914: Association of HOXB13 G84E with prostate cancer among 592, 158 men

Free
Taylor B. Crawford, Tyler Nelson, Roshan Karunamuni, Heena Desai, Ryan Hausler, Craig Teerlink, Hannah Carter, Meghana S. Pagadala, Patrick R. Alba, Scott L. DuVall, Morgan E. Danowski, Charles A. Brunette, Dmitry Ratner, Isla P. Garraway, Brent S. Rose, Kathleen A. Cooney, Jason L. Vassy, Richard L. Hauger, Julie A. Lynch, Tyler M. Seibert, Kara N. Maxwell
Journal: Cancer Research
Cancer Res (2025) 85 (8_Supplement_1): 4914.
https://doi.org/10.1158/1538-7445.AM2025-4914
Published: 21 April 2025
View articletitled, Abstract 4914: Association of HOXB13 G84E with prostate cancer among 592, 158 men
Journal Articles

MHC Hammer Decodes HLA Disruption in Tumors

Available to Purchase
Timothy Sears, Hannah Carter
Journal: Cancer Research
Cancer Res (2025) 85 (4): 642–643.
https://doi.org/10.1158/0008-5472.CAN-24-4553
Published: 17 February 2025
View articletitled, MHC Hammer Decodes HLA Disruption in Tumors
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Journal Articles

Abstract PO4-28-06: A Singleminded-2s/Sirtuin interac4on in the regula4on of mitochondrial dynamics across normal mammary development and ER+ BC progression

Free
Hannah Carter
Journal: Cancer Research
Cancer Res (2024) 84 (9_Supplement): PO4-28-06.
https://doi.org/10.1158/1538-7445.SABCS23-PO4-28-06
Published: 02 May 2024
View articletitled, Abstract PO4-28-06: A Singleminded-2s/Sirtuin interac4on in the regula4on of mitochondrial dynamics across normal mammary development and ER+ BC progression
Journal Articles

Abstract 4955: An analytic pipeline of neoantigen selection for both MHC-I and MHC-II pathways

Free
Ko-Han Lee, Timothy Sears, Andrea Castro, Maurizio Zanetti, Hannah Carter
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 4955.
https://doi.org/10.1158/1538-7445.AM2024-4955
Published: 22 March 2024
View articletitled, Abstract 4955: An analytic pipeline of neoantigen selection for both MHC-I and MHC-II pathways
Journal Articles

Abstract 4899: Interface-guided phenotyping of coding variants in the transcription factor RUNX1

Free
Kivilcim Ozturk, Rebecca Panwala, Jeanna Sheen, Kyle Ford, Nathan Jayne, Dong-Er Zhang, Stephan Hutter, Torsten Haferlach, Trey Ideker, Prashant Mali, Hannah Carter
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 4899.
https://doi.org/10.1158/1538-7445.AM2024-4899
Published: 22 March 2024
View articletitled, Abstract 4899: Interface-guided phenotyping of coding variants in the transcription factor RUNX1
Journal Articles

Abstract 1204: Neoantigen MHC presentability ratios influence the tumor microenvironment and response to immunotherapy

Free
Timothy J. Sears, Ko-Han Lee, Meghana Pagadala, Andrea Castro, Maurizio Zanetti, Hannah Carter
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 1204.
https://doi.org/10.1158/1538-7445.AM2024-1204
Published: 22 March 2024
View articletitled, Abstract 1204: Neoantigen MHC presentability ratios influence the tumor microenvironment and response to immunotherapy
Journal Articles

Abstract LB065: Interface-guided phenotyping of coding variants

Free
Kivilcim Ozturk, Rebecca Panwala, Jeanna Sheen, Prashant Mali, Hannah Carter
Journal: Cancer Research
Cancer Res (2023) 83 (8_Supplement): LB065.
https://doi.org/10.1158/1538-7445.AM2023-LB065
Published: 14 April 2023
View articletitled, Abstract LB065: Interface-guided phenotyping of coding variants
Journal Articles

Abstract 2868: A chemogenetic approach reveals a GPCR-Gαs-PKA signaling axis promoting T cell dysfunction and cancer immunotherapy failure

Free
Bryan S. Yung, Victoria H. Wu, Farhoud Faraji, Robert Saddawi-Konefka, Zhiyong Wang, Alexander T. Wenzel, Miranda Song, Meghana S. Pagadala, Lauren M. Clubb, Joshua Chiou, Sanju Sinha, Marin Matic, Francesco Raimondi, Thomas Hoang, Rebecca Berdeaux, Dario A. Vignali, Ramiro Iglesias-Bartolome, Hannah Carter, Eytan Ruppin, Jill P. Mesirov, J. Silvio Gutkind
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 2868.
https://doi.org/10.1158/1538-7445.AM2023-2868
Published: 04 April 2023
View articletitled, Abstract 2868: A chemogenetic approach reveals a GPCR-Gαs-PKA signaling axis promoting T cell dysfunction and cancer immunotherapy failure
Journal Articles

Abstract 3825: Germline modifiers of the tumor immune microenvironment reveal drivers of immunotherapy response

Free
Meghana Pagadala, Victoria Wu, Eva Pérez-Guijarro, Hyo Kim, Andrea Castro, James Talwar, Cristian Gonzalez-Colin, Steven Cao, Benjamin J. Schmiedel, Timothy Sears, Shervin Goudarzi, Divya Kirani, Rany M. Salem, Gerald P. Morris, Olivier Harismendy, Sandip P. Patel, Jill P. Mesirov, Maurizio Zanetti, Chi-Ping Day, Chun C. Fan, Wesley K. Thompson, Glenn Merlino, J. Silvio Gutkind, Pandurangan Vijayanand, Hannah Carter
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 3825.
https://doi.org/10.1158/1538-7445.AM2022-3825
Published: 15 June 2022
View articletitled, Abstract 3825: Germline modifiers of the tumor immune microenvironment reveal drivers of immunotherapy response
Journal Articles

Abstract 1207: Bento: A toolkit for subcellular spatial analysis of RNA organization

Free
Clarence Mah, Noorsher Ahmed, Dylan Lam, Hannah Carter, Gene Yeo
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 1207.
https://doi.org/10.1158/1538-7445.AM2022-1207
Published: 15 June 2022
View articletitled, Abstract 1207: Bento: A toolkit for subcellular spatial analysis of RNA organization
Journal Articles

Abstract 1942: Interpretation of machine learning methods for the prediction of breast and prostate cancer risk

Free
Adam Klie, James Talwar, Meghana Pagadala, Hannah Carter
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 1942.
https://doi.org/10.1158/1538-7445.AM2022-1942
Published: 15 June 2022
View articletitled, Abstract 1942: Interpretation of machine learning methods for the prediction of breast and prostate cancer risk
Journal Articles

Abstract 828: Common genetic variants influence the composition of the tumor immune microenvironment and host anti-tumor responses

Free
Meghana Pagadala, Hyo Kim, Andrea Castro, Cristian Gonzalez-Colin, Victoria Wu, Steven Cao, Benjamin Schmiedel, Rany Salem, Silvio Gutkind, Wes Thompson, Vijayanand Pandurangan, Hannah Carter
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 828.
https://doi.org/10.1158/1538-7445.AM2021-828
Published: 01 July 2021
View articletitled, Abstract 828: Common genetic variants influence the composition of the tumor immune microenvironment and host anti-tumor responses
Journal Articles

Germline and Somatic Genetic Variants in the p53 Pathway Interact to Affect Cancer Risk, Progression, and Drug Response

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Ping Zhang, Isaac Kitchen-Smith, Lingyun Xiong, Giovanni Stracquadanio, Katherine Brown, Philipp H. Richter, Marsha D. Wallace, Elisabeth Bond, Natasha Sahgal, Samantha Moore, Svanhild Nornes, Sarah De Val, Mirvat Surakhy, David Sims, Xuting Wang, Douglas A. Bell, Jorge Zeron-Medina, Yanyan Jiang, Anderson J. Ryan, Joanna L. Selfe, Janet Shipley, Siddhartha Kar, Paul D. Pharoah, Chey Loveday, Rick Jansen, Lukasz F. Grochola, Claire Palles, Andrew Protheroe, Val Millar, Daniel V. Ebner, Meghana Pagadala, Sarah P. Blagden, Timothy S. Maughan, Enric Domingo, Ian Tomlinson, Clare Turnbull, Hannah Carter, Gareth L. Bond
Journal: Cancer Research
Cancer Res (2021) 81 (7): 1667–1680.
https://doi.org/10.1158/0008-5472.CAN-20-0177
Published: 01 April 2021
View articletitled, Germline and Somatic Genetic Variants in the p53 Pathway Interact to Affect Cancer Risk, Progression, and Drug Response
Open the PDF for Germline and Somatic Genetic Variants in the p53 Pathway Interact to Affect Cancer Risk, Progression, and Drug Response in another window
Includes: Supplementary data
Journal Articles

Abstract 4403: Predicting therapeutic sensitivities from molecular interaction network rewiring of RUNX1-RUNX1T1 fusion

Free
Kivilcim Ozturk, Hannah Carter
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 4403.
https://doi.org/10.1158/1538-7445.AM2020-4403
Published: 15 August 2020
View articletitled, Abstract 4403: Predicting therapeutic sensitivities from molecular interaction network rewiring of RUNX1-RUNX1T1 fusion
Journal Articles

Abstract 2099: Assessing cancer drug response prediction from gene expression

Free
James Talwar, Hannah Carter
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 2099.
https://doi.org/10.1158/1538-7445.AM2020-2099
Published: 15 August 2020
View articletitled, Abstract 2099: Assessing cancer drug response prediction from gene expression
Journal Articles

Abstract 2116: Strength of immune selection in tumors varies with sex and age

Free
Andrea Castro, Rachel M. Pyke, Maurizio Zanetti, Hannah Carter
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 2116.
https://doi.org/10.1158/1538-7445.AM2020-2116
Published: 15 August 2020
View articletitled, Abstract 2116: Strength of immune selection in tumors varies with sex and age
Journal Articles

Cell Adhesiveness Serves as a Biophysical Marker for Metastatic Potential

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Pranjali Beri, Anna Popravko, Benjamin Yeoman, Aditya Kumar, Kevin Chen, Enio Hodzic, Alyssa Chiang, Afsheen Banisadr, Jesse K. Placone, Hannah Carter, Stephanie I. Fraley, Parag Katira, Adam J. Engler
Journal: Cancer Research
Cancer Res (2020) 80 (4): 901–911.
https://doi.org/10.1158/0008-5472.CAN-19-1794
Published: 14 February 2020
View articletitled, Cell Adhesiveness Serves as a Biophysical Marker for Metastatic Potential
Open the PDF for Cell Adhesiveness Serves as a Biophysical Marker for Metastatic Potential in another window
Includes: Supplementary data
Journal Articles

Abstract 5727: MHC II complements MHC I in shaping the mutational landscape of tumors

Free
Rachel Marty, Wesley Thompson, Trey Ideker, Maurizio Zanetti, Hannah Carter
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 5727.
https://doi.org/10.1158/1538-7445.AM2018-5727
Published: 01 July 2018
View articletitled, Abstract 5727: MHC II complements MHC I in shaping the mutational landscape of tumors
Journal Articles

Abstract 1888: 3D matrix confinement triggers vascular mimicry through a conserved migratory and transcriptional response

Free
Daniel Ortiz, Brian Tsui, Tyler Goshia, Colleen Ricker, Hannah Carter, Stephanie I. Fraley
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 1888.
https://doi.org/10.1158/1538-7445.AM2017-1888
Published: 01 July 2017
View articletitled, Abstract 1888: 3D matrix confinement triggers vascular mimicry through a conserved migratory and transcriptional response