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Journal Articles

Subclonal Somatic Copy-Number Alterations Emerge and Dominate in Recurrent Osteosarcoma

Michael D. Kinnaman, Simone Zaccaria, Alvin Makohon-Moore, Brian Arnold, Max F. Levine, Gunes Gundem, Juan E. Arango Ossa, Dominik Glodzik, M. Irene Rodríguez-Sánchez, Nancy Bouvier, Shanita Li, Emily Stockfisch, Marisa Dunigan, Cassidy Cobbs, Umesh K. Bhanot, Daoqi You, Katelyn Mullen, Jerry P. Melchor, Michael V. Ortiz, Tara J. O'Donohue, Emily K. Slotkin, Leonard H. Wexler, Filemon S. Dela Cruz, Meera R. Hameed, Julia L. Glade Bender, William D. Tap, Paul A. Meyers, Elli Papaemmanuil, Andrew L. Kung, Christine A. Iacobuzio-Donahue
Journal: Cancer Research
Cancer Res (2023) 83 (22): 3796–3812.
https://doi.org/10.1158/0008-5472.CAN-23-0385
Published: 15 November 2023
View article titled, Subclonal Somatic Copy-Number Alterations Emerge and Dominate in Recurrent Osteosarcoma
Open the PDF for Subclonal Somatic Copy-Number Alterations Emerge and Dominate in Recurrent Osteosarcoma in another window
Includes: Supplementary data
Journal Articles

Abstract 3556: Assessing patterns of genomic instability in recurrent osteosarcoma

Michael David Kinnaman, Simone Zaccaria, Alvin Makohon-Moore, Gunes Gundem, Juan E. Arango Ossa, Filemon S. Dela Cruz, Paul A. Meyers, Meera Hameed, William D. Tap, Julia Lynne Glade Bender, Elli Papaemmanuil, Andrew Kung, Christine Iacobuzio Donahue
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 3556.
https://doi.org/10.1158/1538-7445.AM2023-3556
Published: 04 April 2023
View article titled, Abstract 3556: Assessing patterns of genomic instability in recurrent osteosarcoma
Journal Articles

Abstract 3142: Enabling whole genome sequencing analysis from FFPE specimens in clinical oncology

Dylan Domenico, Gunes Gundem, Max F. Levine, Juanes E. Arango-Ossa, Pauline Robbe, Georgios Asimomitis, Cassidy Cobbs, Emily Stockfisch, Janine Senz, Dawn Cochrane, Neeman Mohibullah, Neerav Shukla, Sohrab P. Shah, Andrew McPherson, Anna Schuh, Andrew L. Kung, Elli Papaemmanuil
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 3142.
https://doi.org/10.1158/1538-7445.AM2023-3142
Published: 04 April 2023
View article titled, Abstract 3142: Enabling whole genome sequencing analysis from FFPE specimens in clinical oncology
Journal Articles

Abstract 2149: A whole genome sequencing classifier of homologous recombination deficiency

Kevin Hadi, Gunes Gundem, Max F. Levine, Aditya Deshpande, Minal Patel, Stan Skzrypczak, Majd Al Assaad, Juan Miguel Mosquera, Olivier Elemento, Andrew L. Kung, Juan S. Medina-Martínez, Elli Papaemmanuil
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 2149.
https://doi.org/10.1158/1538-7445.AM2023-2149
Published: 04 April 2023
View article titled, Abstract 2149: A whole genome sequencing classifier of homologous recombination deficiency
Journal Articles

Abstract 3437: Whole genome and transcriptome sequencing of a pan cancer cohort unearths novel therapeutic avenues

Majd Al Assaad, Hui-Hsuan Kuo, Jones Nauseef, Max F. Levine, Gunes Gundem, Juan S. Medina-Martínez, Jyothi Manohar, Michael Sigouros, Ahmed Elsaeed, David Wilkes, Elli Papaemmanuil, Eloise Chapman, Scott T. Tagawa, Allyson Ocean, Cora N. Sternberg, Eleni Andreopoulou, Manish Shah, Andrea Sboner, Kevin Holcomb, David Nanus, Laura Martin, Olivier Elemento, Juan Miguel Mosquera
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 3437.
https://doi.org/10.1158/1538-7445.AM2023-3437
Published: 04 April 2023
View article titled, Abstract 3437: Whole genome and transcriptome sequencing of a pan cancer cohort unearths novel therapeutic avenues
Journal Articles

Abstract LB-304: Oncologic therapy for solid tumors alters the risk of clonal hematopoiesis

Kelly Bolton, Ryan Ptashkin, Lior Braunstein, Teng Gao, Sean M. Devlin, Daniel Kelly, Catherine Coombs, Minal Patel, Matahi Moarii, Elsa Bernard, Antonin Berthon, Laura Boucai, Dominik Glodzik, Axel Martin, Zsofia Stadler, Michael Walsh, Diana Mandelker, Akshar Patel, Jessica Schulman, Gunes Gundem, Aijazuddin Syed, Maria Arcila, David B. Solit, Mark E. Robson, Marc Ladanyi, Choonsik Lee, John Philip, Dean Bajorin, Montserrat Garcia-Closas, Stuart Gardos, David Hyman, Martin Tallman, Mariko Yabe, Kenneth Offit, Howard Scher, Virginia Klimek, Luis Diaz, Nilanjan Chatterjee, Michael F. Berger, Lindsay Morton, Ross Levine, Ahmet Zehir, Elli Papaemmanuil
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): LB-304.
https://doi.org/10.1158/1538-7445.AM2019-LB-304
Published: 01 July 2019
View article titled, Abstract LB-304: Oncologic therapy for solid tumors alters the risk of clonal hematopoiesis
Journal Articles

Abstract 5105: A plug-and-play infrastructure for scalable bioinformatics operations

Juan S. Medina-Martínez, Juan E. Arango-Ossa, Gunes Gundem, Max F. Levine, Minal Patel, Noushin R. Farnoud, Venkata D. Yellapantula, Gao Teng, Joseph G. Mccarter, Elsa Bernard, Franck Rapaport, Dominik Glodzik, Ross L. Levine, Andrew Kung, Elli Papaemmanuil
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 5105.
https://doi.org/10.1158/1538-7445.AM2019-5105
Published: 01 July 2019
View article titled, Abstract 5105: A plug-and-play infrastructure for scalable bioinformatics operations
Journal Articles

Abstract 956: The evolutionary history of lethal metastatic prostate cancer

Gunes Gundem, Peter Van Loo, Barbara Kremeyer, Ludmil B. Alexandrov, Jose M.C. Tubio, Elli Papaemmanuil, Daniel S. Brewer, Heini Kallio, Gunilla Högnäs, Matti Annala, Kati Kivinummi, Victoria Goody, Calli Latimer, Sarah O'Meara, Kevin J. Dawson, William Isaacs, Michael R. Emmert-Buck, Matti Nykter, Christopher Foster, Zsofia Kote-Jarai, Douglas Easton, Hayley C. Whitaker, David E. Neal, Colin S. Cooper, Rosalind A. Eeles, Tapio Visakorpi, Peter J. Campbell, Ultan McDermott, David C. Wedge, G. S. Bova
Journal: Cancer Research
Cancer Res (2015) 75 (15_Supplement): 956.
https://doi.org/10.1158/1538-7445.AM2015-956
Published: 01 August 2015
View article titled, Abstract 956: The evolutionary history of lethal metastatic prostate cancer
Journal Articles

Abstract CT135: Uncovering the genomic heterogeneity of multifocal breast cancer

Christine Desmedt, Debora Fumagalli, Elisabetta Pietri, Gabriele Zoppoli, Serena Nik-Zainal, Gunes Gundem, David Brown, Francois Rothe, Samira Majjaj, Anna Garuti, Enrico Carminati, Sherene Loi, Thomas Van Brussel, Marion Maetens, Laura Mudie, Delphine Vincent, Naima Kheddoumi, Luigi Serra, Ilaria Massa, Alberto Ballestrero, Dino Amadori, Roberto Salgado, Alexandre de Wind, Diether Lambrechts, Martine Piccart, Denis Larsimont, Peter J. Campbell, Christos Sotiriou
Journal: Cancer Research
Cancer Res (2015) 75 (15_Supplement): CT135.
https://doi.org/10.1158/1538-7445.AM2015-CT135
Published: 01 August 2015
View article titled, Abstract CT135: Uncovering the genomic heterogeneity of multifocal breast cancer
Journal Articles

Abstract 3883: Clonal evolution of a lethal prostate cancer: Integrated whole genome analysis case study

Heini M.L. Kallio, Matti Annala, Kati Kivinummi, Gunilla Högnäs, Gunes Gundem, David C. Wedge, Peter Van Loo, Holger Heyn, Michael R. Emmert-Buck, William B. Isaacs, Manel Esteller, Ultan McDermott, Matti Nykter, Tapio Visakorpi, G. Steven Bova
Journal: Cancer Research
Cancer Res (2015) 75 (15_Supplement): 3883.
https://doi.org/10.1158/1538-7445.AM2015-3883
Published: 01 August 2015
View article titled, Abstract 3883: Clonal evolution of a lethal prostate cancer: Integrated whole genome analysis case study
Journal Articles

Abstract S2-05: Characterization and clinical relevance of the genomic alterations defining lobular breast cancer

Christine Desmedt, Gunes Gundem, Gabriele Zoppoli, Giancarlo Pruneri, Elia Biganzoli, Marco Fornili, Debora Fumagalli, Françoise Rothé, David Brown, Peter Van Loo, Sylvain Brohée, Delphine Vincent, Naima Keddoumi, Samira Majjaj, Ghizlane Rouas, Thomas Van Brussel, Diether Lambrechts, Otto Metzger, Christine Galant, François Bertucci, Martine Piccart, Denis Larsimont, Giuseppe Viale, Peter J Campbell, Christos Sotiriou
Journal: Cancer Research
Cancer Res (2015) 75 (9_Supplement): S2-05.
https://doi.org/10.1158/1538-7445.SABCS14-S2-05
Published: 01 May 2015
View article titled, Abstract S2-05: Characterization and clinical relevance of the genomic alterations defining lobular breast cancer