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Giovanni Parmigiani
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Journal Articles

Abstract 893: Batch effects in tumor biomarker studies using tissue microarrays: Extent, impact, and remediation

Konrad H. Stopsack, Molin Wang, Svitlana Tyekucheva, Travis A. Gerke, J. Bailey Vaselkiv, Kathryn L. Penney, Philip W. Kantoff, Stephen P. Finn, Michelangelo Fiorentino, Massimo Loda, Giovanni Parmigiani, Lorelei A. Mucci
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 893.
https://doi.org/10.1158/1538-7445.AM2021-893
Published: 01 July 2021
View article titled, Abstract 893: Batch effects in tumor biomarker studies using tissue microarrays: Extent, impact, and remediation
Journal Articles

Abstract 885: A risk prediction tool for individuals with a family history of breast, ovarian, or pancreatic cancer: BRCAPANCPRO

Amanda L. Blackford, Erica J. Childs, Nancy Porter, Gloria Petersen, Kari Rabe, Steven Gallinger, Ayelet Borgida, Sapna Syngal, Ann Schwartz, Michele Cote, Ralph Hruban, Michael Goggins, Alison P. Klein, Giovanni Parmigiani
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 885.
https://doi.org/10.1158/1538-7445.AM2021-885
Published: 01 July 2021
View article titled, Abstract 885: A risk prediction tool for individuals with a family history of breast, ovarian, or pancreatic cancer: BRCAPANCPRO
Journal Articles

Multiomic Analysis of Subtype Evolution and Heterogeneity in High-Grade Serous Ovarian Carcinoma

Ludwig Geistlinger, Sehyun Oh, Marcel Ramos, Lucas Schiffer, Rebecca S. LaRue, Christine M. Henzler, Sarah A. Munro, Claire Daughters, Andrew C. Nelson, Boris J. Winterhoff, Zenas Chang, Shobhana Talukdar, Mihir Shetty, Sally A. Mullany, Martin Morgan, Giovanni Parmigiani, Michael J. Birrer, Li-Xuan Qin, Markus Riester, Timothy K. Starr, Levi Waldron
Journal: Cancer Research
Cancer Res (2020) 80 (20): 4335–4345.
https://doi.org/10.1158/0008-5472.CAN-20-0521
Published: 15 October 2020
View article titled, Multiomic Analysis of Subtype Evolution and Heterogeneity in High-Grade Serous Ovarian Carcinoma
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Includes: Supplementary data
Journal Articles

Abstract B024: Family history of prostate cancer and the incidence of ERG- and PTEN-defined prostate cancer

Dana Hashim, Amparo G. Gonzalez-Feliciano, Thomas U. Ahearn, Andreas Pettersson, Lauren Barber, Claire H. Pernar, Ericka M. Ebot, Stephen Finn, Edward L. Giovannucci, Rosina T. Lis, Massimo Loda, Giovanni Parmigiani, Kathryn L. Penney, Tamara Lotan, Philip W. Kantoff, Lorelei A. Mucci, Rebecca E. Graff
Journal: Cancer Research
Cancer Res (2018) 78 (16_Supplement): B024.
https://doi.org/10.1158/1538-7445.PRCA2017-B024
Published: 14 August 2018
View article titled, Abstract B024: Family history of prostate cancer and the incidence of ERG- and PTEN-defined prostate cancer
Journal Articles

Abstract A045: All happy families are alike: Transcriptomic homogeneity in indolent prostate tumors is a useful prognostic biomarker

Travis Gerke, Svitlana Tyekucheva, Jordan H. Creed, Kathryn L. Penney, Jennifer A. Sinnott, Ericka Ebot, Anders E. Berglund, Massimo Loda, Meir J. Stampfer, Peter Kraft, Giovanni Parmigiani, Lorelei A. Mucci
Journal: Cancer Research
Cancer Res (2018) 78 (16_Supplement): A045.
https://doi.org/10.1158/1538-7445.PRCA2017-A045
Published: 14 August 2018
View article titled, Abstract A045: All happy families are alike: Transcriptomic homogeneity in indolent prostate tumors is a useful prognostic biomarker
Journal Articles

Abstract B045: Gene expression pathways associated with vigorous physical activity in prostate cancer

Claire H. Pernar, Giovanni Parmigiani, Edward L. Giovannucci, Eric B. Rimm, Stephen Finn, Michelangelo Fiorentino, Ericka M. Ebot, Lorelei A. Mucci
Journal: Cancer Research
Cancer Res (2018) 78 (16_Supplement): B045.
https://doi.org/10.1158/1538-7445.PRCA2017-B045
Published: 14 August 2018
View article titled, Abstract B045: Gene expression pathways associated with vigorous physical activity in prostate cancer
Journal Articles

Abstract SY32-01: Knowledge management and decision support for commonly tested susceptibility mutations

Giovanni Parmigiani, Danielle Braun, Kevin S. Hughes
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): SY32-01.
https://doi.org/10.1158/1538-7445.AM2018-SY32-01
Published: 01 July 2018
View article titled, Abstract SY32-01: Knowledge management and decision support for commonly tested susceptibility mutations
Journal Articles

Abstract 5719: Long intergenic non-coding RNAs: a new independent risk predictors in multiple myeloma

Mehmet K. Samur, Annamaria Gulla, Mariateresa Fulciniti, Anil Aktas Samur, Raphael Szalat, Masood Shamas, Florence Magrangeas, Stephane Minvielle, Kenneth Anderson, Giovanni Parmigiani, Hervé Avet-Loiseau, Nikhil Munshi
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 5719.
https://doi.org/10.1158/1538-7445.AM2017-5719
Published: 01 July 2017
View article titled, Abstract 5719: Long intergenic non-coding RNAs: a new independent risk predictors in multiple myeloma
Journal Articles

Abstract 2543: A family affair: Prostate cancer risk and family history of breast or prostate cancer

Lauren E. Barber, Travis A. Gerke, Sarah C. Markt, Giovanni Parmigiani, Lorelei A. Mucci
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 2543.
https://doi.org/10.1158/1538-7445.AM2016-2543
Published: 15 July 2016
View article titled, Abstract 2543: A family affair: Prostate cancer risk and family history of breast or prostate cancer
Journal Articles

Abstract 2355: Risk prediction for late-stage ovarian cancer by meta-analysis of 1,525 patient samples

Markus Riester, Wei Wei, Aedin C. Culhane, Lorenzo Trippa, Franziska Michor, Curtis Huttenhower, Giovanni Parmigiani, Michael Birrer
Journal: Cancer Research
Cancer Res (2014) 74 (19_Supplement): 2355.
https://doi.org/10.1158/1538-7445.AM2014-2355
Published: 01 October 2014
View article titled, Abstract 2355: Risk prediction for late-stage ovarian cancer by meta-analysis of 1,525 patient samples
Journal Articles

Abstract 2353: A comparative meta-analysis of prognostic gene signatures for late-stage ovarian cancer

Levi Waldron, Markus Riester, Michael Birrer, Giovanni Parmigiani
Journal: Cancer Research
Cancer Res (2014) 74 (19_Supplement): 2353.
https://doi.org/10.1158/1538-7445.AM2014-2353
Published: 01 October 2014
View article titled, Abstract 2353: A comparative meta-analysis of prognostic gene signatures for late-stage ovarian cancer
Journal Articles

Estimating CDKN2A Carrier Probability and Personalizing Cancer Risk Assessments in Hereditary Melanoma Using MelaPRO

Wenyi Wang, Kristin B. Niendorf, Devanshi Patel, Amanda Blackford, Fabio Marroni, Arthur J. Sober, Giovanni Parmigiani, Hensin Tsao
Journal: Cancer Research
Cancer Res (2010) 70 (2): 552–559.
https://doi.org/10.1158/0008-5472.CAN-09-2653
Published: 13 January 2010
View article titled, Estimating <em>CDKN2A</em> Carrier Probability and Personalizing Cancer Risk Assessments in Hereditary Melanoma Using MelaPRO
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Includes: Supplementary data
Journal Articles

A Primary Xenograft Model of Small-Cell Lung Cancer Reveals Irreversible Changes in Gene Expression Imposed by Culture In vitro

Vincent C. Daniel, Luigi Marchionni, Jared S. Hierman, Jonathan T. Rhodes, Wendy L. Devereux, Charles M. Rudin, Rex Yung, Giovanni Parmigiani, Marion Dorsch, Craig D. Peacock, D. Neil Watkins
Journal: Cancer Research
Cancer Res (2009) 69 (8): 3364–3373.
https://doi.org/10.1158/0008-5472.CAN-08-4210
Published: 15 April 2009
View article titled, A Primary Xenograft Model of Small-Cell Lung Cancer Reveals Irreversible Changes in Gene Expression Imposed by Culture <em>In vitro</em>
Open the PDF for A Primary Xenograft Model of Small-Cell Lung Cancer Reveals Irreversible Changes in Gene Expression Imposed by Culture <em>In vitro</em> in another window
Includes: Supplementary data
Journal Articles

Genetic Mutations Associated with Cigarette Smoking in Pancreatic Cancer

Amanda Blackford, Giovanni Parmigiani, Thomas W. Kensler, Christopher Wolfgang, Siân Jones, Xiaosong Zhang, D. Willams Parsons, Jimmy Cheng-Ho Lin, Rebecca J. Leary, James R. Eshleman, Michael Goggins, Elizabeth M. Jaffee, Christine A. Iacobuzio-Donahue, Anirban Maitra, Alison Klein, John L. Cameron, Kelly Olino, Richard Schulick, Jordan Winter, Bert Vogelstein, Victor E. Velculescu, Kenneth W. Kinzler, Ralph H. Hruban
Journal: Cancer Research
Cancer Res (2009) 69 (8): 3681–3688.
https://doi.org/10.1158/0008-5472.CAN-09-0015
Published: 15 April 2009
View article titled, Genetic Mutations Associated with Cigarette Smoking in Pancreatic Cancer
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Includes: Supplementary data
Journal Articles

LUNGpro: Design and validation of a lung cancer mendelian risk prediction model

Betty Doan, Joan Bailey-Wilson, Giovanni Parmigiani
Journal: Cancer Research
Cancer Res (2008) 68 (9_Supplement): 511.
Published: 01 May 2008
View article titled, LUNGpro: Design and validation of a lung cancer mendelian risk prediction model
Journal Articles

Cancer risks for MLH1 and MSH2 mutation carriers from 65 large Lynch syndrome families in the US

Sining Chen, Yue Yin, Wenyi Wang, Henry Lynch, Patrice Watson, Giovanni Parmigiani
Journal: Cancer Research
Cancer Res (2007) 67 (9_Supplement): 4257.
Published: 01 May 2007
View article titled, Cancer risks for MLH1 and MSH2 mutation carriers from 65 large Lynch syndrome families in the US
Journal Articles

Gene set enrichment analysis of prostate cancer cells to study histone deacetylase inhibitor resistance

Madeleine Kortenhorst, Luigi Marchionni, Marianna Zahurak, Shabana Shabbeer, Sushant Kachhap, Giovanni Parmigiani, Henk Verheul, Michael Carducci
Journal: Cancer Research
Cancer Res (2007) 67 (9_Supplement): 4416.
Published: 01 May 2007
View article titled, Gene set enrichment analysis of prostate cancer cells to study histone deacetylase inhibitor resistance
Journal Articles

Altered gene expression in replicative senescence is mediated by the SNF2-like gene product, PASG

Lin-Quan Sun, Jiangwen Zhang, David Lee, Giovanni Parmigiani, Robert J. Arceci
Journal: Cancer Research
Cancer Res (2005) 65 (9_Supplement): 666.
Published: 01 May 2005
View article titled, Altered gene expression in replicative senescence is mediated by the SNF2-like gene product, PASG
Journal Articles

Relationships and Differentially Expressed Genes among Pancreatic Cancers Examined by Large-scale Serial Analysis of Gene Expression

Byungwoo Ryu, Jessa Jones, Natalie J. Blades, Giovanni Parmigiani, Michael A. Hollingsworth, Ralph H. Hruban, Scott E. Kern
Journal: Cancer Research
Cancer Res (2002) 62 (3): 819–826.
Published: 01 February 2002
View article titled, Relationships and Differentially Expressed Genes among Pancreatic Cancers Examined by Large-scale Serial Analysis of Gene Expression
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Journal Articles

Detection of Mitochondrial DNA Mutations in Pancreatic Cancer Offers a “Mass”-ive Advantage over Detection of Nuclear DNA Mutations

Jessa B. Jones, Jason J. Song, Paula M. Hempen, Giovanni Parmigiani, Ralph H. Hruban, Scott E. Kern
Journal: Cancer Research
Cancer Res (2001) 61 (4): 1299–1304.
Published: 02 February 2001
View article titled, Detection of Mitochondrial DNA Mutations in Pancreatic Cancer Offers a “Mass”-ive Advantage over Detection of Nuclear DNA Mutations
Open the PDF for Detection of Mitochondrial DNA Mutations in Pancreatic Cancer Offers a “Mass”-ive Advantage over Detection of Nuclear DNA Mutations in another window