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Journal Articles

Abstract LB327: DNA methylation biomarkers for early bladder cancer detection and treatment response monitoring

Paolo Piatti, Sia Daneshmand, Sanam Ladi Seyedian, Saum Ghodossipour, Hamed Ahmadi, Suzanne Roberts, Alireza Ghoreifi, Michael Basin, Simin Hajian, Yap Ching Chew, Jeffrey Bhasin, Benjamin Jara, Lucy Sanossian, Hooman Djaladat, Anne Shuckman, Sumeet Bhavandia, Gangning Liang
Journal: Cancer Research
Cancer Res (2024) 84 (7_Supplement): LB327.
https://doi.org/10.1158/1538-7445.AM2024-LB327
Published: 05 April 2024
View article titled, Abstract LB327: DNA methylation biomarkers for early bladder cancer detection and treatment response monitoring
Journal Articles

Abstract 3493: Read-level methylation pattern extraction for high-multiplex large-scale targeted NGS assay

Mingda Jin, Masatomo Kaneko, Steven Cen, Hongtao Li, Wei Guo, Xinyi Zhou, Atsuko Fujihara, Tsuyoshi Iwata, Lorenzo Storino Ramacciotti, Divyangi Paralkar, Giovanni E Cacciamani, Manju Aron, Osamu Ukimura, Inderbir S. Gill, Gangning Liang, Andre L. Abreu, Jeffrey Bhasin, Xiaojing Yang, Xi-Yu Jia
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 3493.
https://doi.org/10.1158/1538-7445.AM2024-3493
Published: 22 March 2024
View article titled, Abstract 3493: Read-level methylation pattern extraction for high-multiplex large-scale targeted NGS assay
Journal Articles

Abstract 1501: Engineering tissue models to elucidate prostate cancer bone metastasis dynamics

Bo Han, Zhi Yang, Shuqing Zhao, Gangning Liang, Ba Xuan Hoang, Josephine Fang
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 1501.
https://doi.org/10.1158/1538-7445.AM2024-1501
Published: 22 March 2024
View article titled, Abstract 1501: Engineering tissue models to elucidate prostate cancer bone metastasis dynamics
Journal Articles

Abstract 7011: The DNA methylation landscape across the TCR loci genes in patients with acute myeloid leukemia

Mateusz Pospiech, John Beckford, Advaith M. Kumar, Mukund Tamizharasan, Jaqueline Brito, Gangning Liang, Serghei Mangul, Houda Alachkar
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 7011.
https://doi.org/10.1158/1538-7445.AM2024-7011
Published: 22 March 2024
View article titled, Abstract 7011: The DNA methylation landscape across the TCR loci genes in patients with acute myeloid leukemia
Journal Articles

SETD2 Deficiency Confers Sensitivity to Dual Inhibition of DNA Methylation and PARP in Kidney Cancer

Xinyi Zhou, Yohei Sekino, Hong-Tao Li, Guanghou Fu, Zhi Yang, Shuqing Zhao, Hemant Gujar, Xiongbing Zu, Daniel J. Weisenberger, Inderbir S. Gill, Varsha Tulpule, Anishka D’souza, David I. Quinn, Bo Han, Gangning Liang
Journal: Cancer Research
Cancer Res (2023) 83 (22): 3813–3826.
https://doi.org/10.1158/0008-5472.CAN-23-0401
Published: 15 November 2023
View article titled, <em>SETD2</em> Deficiency Confers Sensitivity to Dual Inhibition of DNA Methylation and PARP in Kidney Cancer
Open the PDF for <em>SETD2</em> Deficiency Confers Sensitivity to Dual Inhibition of DNA Methylation and PARP in Kidney Cancer in another window
Includes: Supplementary data
Journal Articles

Abstract 3335: DNA methylation markers for the surveillance of non-muscle invasive bladder cancer: Results from a prospective pilot study

Paolo Piatti, Sanam Ladi-Seyedian, Sidney Roberts, Farshad Sheybaee Moghadam, Alireza Ghoreifi, Jeffrey Bhasin, Benjamin Jara, Lucy Sanossian, Yap Ching Chew, Sumeet Bhanvadia, Hooman Djaladat, Anne Schuckman, Gangning Liang, Siamak Daneshmand
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 3335.
https://doi.org/10.1158/1538-7445.AM2023-3335
Published: 04 April 2023
View article titled, Abstract 3335: DNA methylation markers for the surveillance of non-muscle invasive bladder cancer: Results from a prospective pilot study
Journal Articles

Abstract 3296: A urine-based DNA methylation marker test to detect upper tract urothelial carcinoma: a prospective pilot study

Paolo Piatti, Alireza Ghoreifi, Sanam Seyedian, Yap Ching Chew, Benjamin Jara, Lucy Sanossian, Jeffrey Bhasin, Michael Basin, Taikun Yamada, Gerhard Fuchs, Sumeet Bhanvadia, Rene Sotelo, Andrew Hung, Monish Aron, Mihir Desai, Inderbir Gill, Siamak Daneshmand, Gangning Liang, Hooman Djaladat
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 3296.
https://doi.org/10.1158/1538-7445.AM2023-3296
Published: 04 April 2023
View article titled, Abstract 3296: A urine-based DNA methylation marker test to detect upper tract urothelial carcinoma: a prospective pilot study
Journal Articles

Abstract 3736: SETD2 aberrancy enhanced the synergetic anti-tumor effects of DNA hypomethylating agents and PARP inhibitors in aggressive clear cell renal cell carcinoma

Xinyi Zhou, Guanghou Fu, Hong-Tao Li, Hemant Gujar, Daniel J. Weisenberger, David I. Quinn, Bo Han, Gangning Liang
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 3736.
https://doi.org/10.1158/1538-7445.AM2022-3736
Published: 15 June 2022
View article titled, Abstract 3736: SETD2 aberrancy enhanced the synergetic anti-tumor effects of DNA hypomethylating agents and PARP inhibitors in aggressive clear cell renal cell carcinoma
Journal Articles

Abstract 2499: Identifying DNA methylation signatures of retinoblastoma via aqueous humor, a novel ocular liquid biopsy

Liya Xu, Hongtao Li, Dan Weisenberger, Gangning Liang, Jesse Berry
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 2499.
https://doi.org/10.1158/1538-7445.AM2022-2499
Published: 15 June 2022
View article titled, Abstract 2499: Identifying DNA methylation signatures of retinoblastoma via aqueous humor, a novel ocular liquid biopsy
Journal Articles

Abstract 3618: Loss of SETD2 sensitizes kidney cancer cells to DNA methylation inhibitors by inducing viral mimicry and RNA mis-splicing

Hong-Tao Li, Hyo Sik Jang, Krizia Rohena-Rivera, Hemant Gujar, Minmin Liu, Justin Kulchycki, Xinyi Zhou, Shuqing Zhao, Peter Jones, Neil Bhowmick, Gangning Liang
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 3618.
https://doi.org/10.1158/1538-7445.AM2022-3618
Published: 15 June 2022
View article titled, Abstract 3618: Loss of SETD2 sensitizes kidney cancer cells to DNA methylation inhibitors by inducing viral mimicry and RNA mis-splicing
Journal Articles

Abstract 1078: The nucleosomal acidic patch helps anchor of de novo DNA methyltransferase DNMT3A2/3B3 complex

Ting-Hai Xu, Minmin Liu, Edward Zhou, Gangning Liang, Eric H. Xu, Karsten Melcher, Peter A. Jones
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 1078.
https://doi.org/10.1158/1538-7445.AM2020-1078
Published: 15 August 2020
View article titled, Abstract 1078: The nucleosomal acidic patch helps anchor of <em>de novo</em> DNA methyltransferase DNMT3A2/3B3 complex
Journal Articles

Abstract 462: The mutated chromatin modifier gene, H3F3AK27M, is a druggable target of DNA hypomethylating agents in pediatric high-grade glioma

Hemant Gujar, Lian Zhang, Hong-Tao Li, Hitoshi Otani, Daniel J. Weisenberger, Anat Erdreich-Epstein, Gangning Liang
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 462.
https://doi.org/10.1158/1538-7445.AM2020-462
Published: 15 August 2020
View article titled, Abstract 462: The mutated chromatin modifier gene, H3F3AK27M, is a druggable target of DNA hypomethylating agents in pediatric high-grade glioma
Journal Articles

Abstract 2295: Bladder care epigenetic test allows the sensitive early detection of bladder cancer from urine samples

Paolo Piatti, Michiko Suwoto, Taikun Jamada, Yap Ching Chew, Gangning Liang, Saum Ghodossipour, Siamak Daneshmand, Xi-Yu Jia
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 2295.
https://doi.org/10.1158/1538-7445.AM2020-2295
Published: 15 August 2020
View article titled, Abstract 2295: Bladder care epigenetic test allows the sensitive early detection of bladder cancer from urine samples
Journal Articles

Abstract 140: Deregulated genes by abnormal promoter methylation in early and late stages in a linear model of melanoma progression

Débora Papaiz, Flávia E. Rius, Diogo Pessoa, Eduardo M. Reis, Christopher E. Mason, Gangning Liang, Miriam G. Jasiulionis
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 140.
https://doi.org/10.1158/1538-7445.AM2020-140
Published: 15 August 2020
View article titled, Abstract 140: Deregulated genes by abnormal promoter methylation in early and late stages in a linear model of melanoma progression
Journal Articles

Activation of a Subset of Evolutionarily Young Transposable Elements and Innate Immunity Are Linked to Clinical Responses to 5-Azacytidine

Hitoshi Ohtani, Andreas D. Ørskov, Alexandra S. Helbo, Linn Gillberg, Minmin Liu, Wanding Zhou, Johanna Ungerstedt, Eva Hellström-Lindberg, Weili Sun, Gangning Liang, Peter A. Jones, Kirsten Grønbæk
Journal: Cancer Research
Cancer Res (2020) 80 (12): 2441–2450.
https://doi.org/10.1158/0008-5472.CAN-19-1696
Published: 15 June 2020
View article titled, Activation of a Subset of Evolutionarily Young Transposable Elements and Innate Immunity Are Linked to Clinical Responses to 5-Azacytidine
Open the PDF for Activation of a Subset of Evolutionarily Young Transposable Elements and Innate Immunity Are Linked to Clinical Responses to 5-Azacytidine in another window
Includes: Supplementary data
Journal Articles

Abstract 3139: EphB4-EphrinB2 receptor-ligand are downstream effectors and novel targets of PTEN deficient prostate cancer

Grace X. Li, Binyun Ma, Valery G. Krasnoperov, Imran Siddiqi, Akash Sali, Gangning Liang, Inderbir S. Gill, Jacek K. Pinski, David I. Quinn, Sarmad Sadeghi, Parkash S. Gill
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 3139.
https://doi.org/10.1158/1538-7445.AM2019-3139
Published: 01 July 2019
View article titled, Abstract 3139: EphB4-EphrinB2 receptor-ligand are downstream effectors and novel targets of PTEN deficient prostate cancer
Journal Articles

Abstract 4335: Epigenetic plasticity potentiates a rapid cyclical shift to and from an aggressive cancer phenotype

Tong Xu, Hongtao Li, Rong Xu, Jenny Wei, Meng Li, Gangning Liang, Amir Goldkorn
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 4335.
https://doi.org/10.1158/1538-7445.AM2019-4335
Published: 01 July 2019
View article titled, Abstract 4335: Epigenetic plasticity potentiates a rapid cyclical shift to and from an aggressive cancer phenotype
Journal Articles

Abstract 3092: Activation of evolutionarily young transposable elements and the host innate immune system are linked to clinical response to 5-azacitidine

Hitoshi Ohtani, Andreas D. Ørskov, Alexandra S. Helbo, Linn Gillberg, Minmin Liu, Wanding Zhou, Johanna Ungerstedt, Eva Hellstrom-Lindberg, Weili Sun, Gangning Liang, Peter A. Jones, Kirsten Grønbæk
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 3092.
https://doi.org/10.1158/1538-7445.AM2019-3092
Published: 01 July 2019
View article titled, Abstract 3092: Activation of evolutionarily young transposable elements and the host innate immune system are linked to clinical response to 5-azacitidine
Journal Articles

Dual Inhibition of DNA and Histone Methyltransferases Increases Viral Mimicry in Ovarian Cancer Cells

Minmin Liu, Stacey L. Thomas, Ashley K. DeWitt, Wanding Zhou, Zachary B. Madaj, Hitoshi Ohtani, Stephen B. Baylin, Gangning Liang, Peter A. Jones
Journal: Cancer Research
Cancer Res (2018) 78 (20): 5754–5766.
https://doi.org/10.1158/0008-5472.CAN-17-3953
Published: 15 October 2018
View article titled, Dual Inhibition of DNA and Histone Methyltransferases Increases Viral Mimicry in Ovarian Cancer Cells
Open the PDF for Dual Inhibition of DNA and Histone Methyltransferases Increases Viral Mimicry in Ovarian Cancer Cells in another window
Includes: Supplementary data
Journal Articles

Abstract 2993: A switch in epigenetic silencing mechanisms of endogenous retroviruses during human genome evolution

Hitoshi Ohtani, Minmin Liu, Wanding Zhou, Gangning Liang, Peter A. Jones
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 2993.
https://doi.org/10.1158/1538-7445.AM2018-2993
Published: 01 July 2018
View article titled, Abstract 2993: A switch in epigenetic silencing mechanisms of endogenous retroviruses during human genome evolution