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Ethan Cerami
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Journal Articles

Abstract 1198: MatchMiner: An open-source computational platform that accelerates patient enrollment on to precision medicine trials

Harry Klein, Tali Mazor, Priti Kumari, James Lindsay, Andrea Ovalle, Ethan Siegel, Pavel Trukhanov, Joyce Yu, Michael Hassett, Ethan Cerami
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 1198.
DOI: https://doi.org/10.1158/1538-7445.AM2021-1198
Published: 01 July 2021
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Abstract 207: The cBioPortal for Cancer Genomics

Jianjiong Gao, Tali Mazor, Ino de Bruijn, Adam Abeshouse, Diana Baiceanu, Ziya Erkoc, Benjamin Gross, David Higgins, Prasanna K. Jagannathan, Karthik Kalletla, Priti Kumari, Ritika Kundra, Xiang Li, James Lindsay, Aaron Lisman, Pieter Lukasse, Divya Madala, Ramyasree Madupuri, Angelica Ochoa, Oleguer Plantalech, Joyce Quach, Sander Rodenburg, Anusha Satravada, Fedde Schaeffer, Robert Sheridan, Lucas Sikina, S. Onur Sumer, Yichao Sun, Paul van Dijk, Pim van Nierop, Avery Wang, Manda Wilson, Hongxin Zhang, Gaofei Zhao, Sjoerd van Hagen, Kees van Bochove, Ugur Dogrusoz, Allison Heath, Adam Resnick, Trevor J. Pugh, Chris Sander, Ethan Cerami, Nikolaus Schultz
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 207.
DOI: https://doi.org/10.1158/1538-7445.AM2021-207
Published: 01 July 2021
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Abstract 171: Cloud-based bulk and single-cell RNAseq pipelines in the Terra platform for the Lung PCA

Chris Husted, François Aguet, Conor Shea, Adam Gower, William Mischler, Yusuke Koga, Rui Hong, Steven Dubinett, Avrum Spira, Sarah A. Mazzilli, Ethan Cerami, Ignaty Leshchiner, Marc E. Lenburg, Gad Getz, Jennifer E. Beane, Joshua D. Campbell
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 171.
DOI: https://doi.org/10.1158/1538-7445.AM2021-171
Published: 01 July 2021
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Abstract 1097: FGFR2 in-frame indels: A novel targetable alteration in intrahepatic cholangiocarcinoma

Yvonne Y. Li, James M. Cleary, Srivatsan Raghavan, Liam F. Spurr, Qibiao Wu, Lei Shi, Lauren K. Brais, Maureen Loftus, Lipika Goyal, Anuj K. Patel, Atul B. Shinagare, Thomas E. Clancy, Geoffrey Shapiro, Ethan Cerami, William R. Sellers, William C. Hahn, Matthew Meyerson, Nabeel Bardeesy, Andrew D. Cherniack, Brian M. Wolpin
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 1097.
DOI: https://doi.org/10.1158/1538-7445.AM2020-1097
Published: 15 August 2020
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Journal Articles

Abstract 3382: MatchMiner: An open-source computational platform for genomically-driven matching of cancer patients to precision medicine clinical trials

Tali Mazor, Rachel B. Keller, Priti Kumai, James Lindsay, Eric Marriott, Andrea Ovalle, Ethan Siegel, Joyce Yu, Michael Hassett, Ethan Cerami
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 3382.
DOI: https://doi.org/10.1158/1538-7445.AM2020-3382
Published: 15 August 2020
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Abstract 3209: The cBioPortal for Cancer Genomics

Jianjiong Gao, Tali Mazor, Adam Abeshouse, Ino de Bruijn, Benjamin Gross, Karthik Kalletla, Priti Kumari, Ritika Kundra, Xiang Li, James Lindsay, Aaron Lisman, Pieter Lukasse, Ramyasree Madupuri, Angelica Ochoa, Oleguer Plantalech, Sander Rodenburg, Fedde Schaeffer, Robert Sheridan, Lucas Sikina, Jing Su, S. Onur Sumer, Yichao Sun, Paul van Dijk, Sjoerd van Hagen, Pim van Nierop, Avery Wang, Manda Wilson, Hongxin Zhang, Gaofei Zhao, Kelsey Zhu, Kees van Bochove, Ugur Dogrusoz, Allison Heath, Adam Resnick, Trevor J. Pugh, Chris Sander, Ethan Cerami, Nikolaus Schultz
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 3209.
DOI: https://doi.org/10.1158/1538-7445.AM2020-3209
Published: 15 August 2020
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Journal Articles

Abstract 910: The cBioPortal for cancer genomics

Jianjiong Gao, Tali Mazor, Adam Abeshouse, Ersin Ciftci, Ino de Bruijn, Benjamin Gross, Karthik Kalletla, Priti Kumari, Ritika Kundra, James Lindsay, Aaron Lisman, Pieter Lukasse, Ramyasree Madupuri, Angelica Ochoa, Oleguer Plantalech, Pichai Raman, Fedde Schaeffer, Robert Sheridan, Jing Su, S. Onur Sumer, Yichao Sun, Sander Tan, Sjoerd van Hagen, Avery Wang, Manda Wilson, Hongxin Zhang, Gaofei Zhao, Kelsey Zhu, Kees van Bochove, Ugur Dogrusoz, Trevor J. Pugh, Adam Resnick, Chris Sander, Ethan Cerami, Nikolaus Schultz
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 910.
DOI: https://doi.org/10.1158/1538-7445.AM2019-910
Published: 01 July 2019
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Abstract 923: The cBioPortal for Cancer Genomics: An intuitive open-source platform for exploration, analysis and visualization of cancer genomics data

Jianjiong Gao, Tali Mazor, Ersin Ciftci, Pichai Raman, Pieter Lukasse, Istemi Bahceci, Alexandros Sigaras, Adam Abeshouse, Ino de Bruijn, Benjamin Gross, Ritika Kundra, Aaron Lisman, Angelica Ochoa, Robert Sheridan, Jing Su, Selcuk O. Sumer, Yichao Sun, Avery Wang, Jiaojiao Wang, Manda Wilson, Hongxin Zhang, Priti Kumari, James Lindsay, Karthik Kalletla, Kelsey Zhu, Oleguer Plantalech, Fedde Schaeffer, Sander Tan, Dionne Zaal, Sjoerd van Hagen, Kees van Bochove, Ugur Dogrusoz, Trevor J. Pugh, Adam Resnick, Chris Sander, Nikolaus Schultz, Ethan Cerami
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 923.
DOI: https://doi.org/10.1158/1538-7445.AM2018-923
Published: 01 July 2018
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Abstract 2288: Assessing patient trial readiness for precision cancer medicine clinical trials through computational trial matching and rule-based logic applied to genomic and clinical data

Catherine Del Vecchio Fitz, Khanh Do, James Lindsay, Suzanne Hector-Barry, Zachary Zwiesler, Priti Kumari, Tali Mazor, Tamba Monrose, Adem Albayrak, John Methot, Michael Hassett, Geoffrey Shapiro, Ethan Cerami
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 2288.
DOI: https://doi.org/10.1158/1538-7445.AM2018-2288
Published: 01 July 2018
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Journal Articles

Abstract 2607: The cBioPortal for Cancer Genomics: an open source platform for accessing and interpreting complex cancer genomics data in the era of precision medicine

Jianjiong Gao, Ersin Ciftci, Pichai Raman, Pieter Lukasse, Istemi Bahceci, Adam Abeshouse, Hsiao-Wei Chen, Ino de Bruijn, Benjamin Gross, Zachary Heins, Ritika Kundra, Aaron Lisman, Angelica Ochoa, Robert Sheridan, Onur Sumer, Yichao Sun, Jiaojiao Wang, Manda Wilson, Hongxin Zhang, James Xu, Andy Dufilie, Priti Kumari, James Lindsay, Anthony Cros, Karthik Kalletla, Fedde Schaeffer, Sander Tan, Sjoerd van Hagen, Jorge Reis-Filho, Kees van Bochove, Ugur Dogrusoz, Trevor Pugh, Adam Resnick, Chris Sander, Ethan Cerami, Nikolaus Schultz
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 2607.
DOI: https://doi.org/10.1158/1538-7445.AM2017-2607
Published: 01 July 2017
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Abstract 2608: Global integration of knowledgebases for clinical interpretation of cancer variants

Obi L. Griffith, Malachi Griffith, David Tamborero, Alex H. Wagner, Kilannin Krysiak, Catherine Del Vecchio Fitz, Debyani Chakravarty, Ethan Cerami, Olivier Elemento, Nikolaus Schultz, Adam Margolin, Nuria Lopez-Bigas
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 2608.
DOI: https://doi.org/10.1158/1538-7445.AM2017-2608
Published: 01 July 2017
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Journal Articles

Abstract LB-102: Landscape analysis of the initial data release from AACR Project GENIE

Ethan Cerami, Alexander S. Baras, Justin Guinney, Eva Lepisto, Trevor J. Pugh, Nikolaus Schultz, Thomas Stricker, Shawn M. Sweeney, Laura J. van't Veer, Gerrit A. Meijer, Fabrice Andre, Victor E. Velculescu, Kenna R. Shaw, Mia A. Levy, Philippe L. Bedard, Barrett J. Rollins, Charles L. Sawyers, on behalf of the AACR Project GENIE Consortium
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): LB-102.
DOI: https://doi.org/10.1158/1538-7445.AM2017-LB-102
Published: 01 July 2017
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Abstract 5277: The cBioPortal for cancer genomics and its application in precision oncology

Jianjiong Gao, James Lindsay, Stuart Watt, Istemi Bahceci, Pieter Lukasse, Adam Abeshouse, Hsiao-Wei Chen, Ino de Bruijn, Benjamin Gross, Dong Li, Ritika Kundra, Zachary Heins, Jorge Reis-Filho, Onur Sumer, Yichao Sun, Jiaojiao Wang, Qingguo Wang, Hongxin Zhang, Priti Kumari, M. Furkan Sahin, Sander de Ridder, Fedde Schaeffer, Kees van Bochove, Ugur Dogrusoz, Trevor Pugh, Chris Sander, Ethan Cerami, Nikolaus Schultz
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 5277.
DOI: https://doi.org/10.1158/1538-7445.AM2016-5277
Published: 15 July 2016
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Abstract 954: The landscape of kinase fusions in cancer

Nicolas Stransky, Ethan Cerami, Stefanie Schalm, Joseph L. Kim, Klaus Hoeflich, Christoph Lengauer
Journal: Cancer Research
Cancer Res (2015) 75 (15_Supplement): 954.
DOI: https://doi.org/10.1158/1538-7445.AM2015-954
Published: 01 August 2015
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