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Debyani Chakravarty
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Journal Articles

Abstract 2182: Ancestry inference and population-specific disparities in a real-world clinical sequencing cohort

Kanika Arora, Thinh N. Tran, Yelena M. Kemel, Miika Mehine, Ying Liu, Shaleigh A. Smith, Subhiksha Nandakumar, Irina Ostrovnaya, Thomas C. Reynolds, Kenneth Offit, David Solit, Marc Ladanyi, Nikolaus Schultz, Ahmet Zehir, Carol L. Brown, Debyani Chakravarty, Zsofia K. Stadler, Chaitanya Bandlamudi, Michael F. Berger
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 2182.
DOI: https://doi.org/10.1158/1538-7445.AM2022-2182
Published: 15 June 2022
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Journal Articles

Abstract 3628: Comprehensive identification of lineage associated cancer genes in 122 histologies

Chaitanya Bandlamudi, Walid K. Chatila, Shaleigh A. Smith, Subhiksha Nandakumar, Craig Bielski, Bastien Nguyen, Henry S. Walch, Christoph K. Kreitzer, Kanika S. Arora, Tran Thinh Ngoc, Miika Mehine, Irina Ostrovnaya, Ino de Bruijn, Hyung Jun Woo, Ritika Kundra, Christopher J. Fong, Satshil Rana, Gaofei Zhao, Mingxuan Zhang, Mark R. Zucker, Hongxin Zhang, Ryan Ptashkin, Rose Brannon, Eduard Reznik, JianJiong Gao, Maria E. Arcila, Ryma Benayed, Debyani Chakravarty, David Solit, Mark T. Donoghue, Marc Ladanyi, Nikolaus D. Schultz, Michael F. Berger, Ahmet Zehir
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 3628.
DOI: https://doi.org/10.1158/1538-7445.AM2022-3628
Published: 15 June 2022
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Journal Articles

Abstract 3634: Integrative analysis of the contribution of genomic and clinical factors to worse clinical outcomes in non-Hispanic Black patients with colorectal cancer

Henry Walch, Anisha Luthra, Walid K. Chatila, Fan Wu, Debyani Chakravarty, Chin-Tung Chen, Rupa Sood, Dana M. Omer, Jesse J. Smith, Nikolaus Schultz, Karuna Ganesh, Julio Garcia-Aguilar, Rona Yaeger, Francisco Sanchez-Vega
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 3634.
DOI: https://doi.org/10.1158/1538-7445.AM2022-3634
Published: 15 June 2022
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Journal Articles

Abstract 1189: OncoKB, MSK’s precision oncology knowledge base

Sarah P. Suehnholz, Moriah Nissan, Hongxin Zhang, Ritika Kundra, Calvin Lu, Benjamin Xu, Maria E. Arcila, Marc Ladanyi, Michael F. Berger, Ahmet Zehir, Aijaz Syed, Julia E. Rudolph, Ross L. Levine, Ahmet Dogan, Jianjiong Gao, David B. Solit, Nikolaus Schultz, Debyani Chakravarty
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 1189.
DOI: https://doi.org/10.1158/1538-7445.AM2022-1189
Published: 15 June 2022
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Journal Articles

Abstract 99: Evolution of OncoKB, a precision oncology knowledgebase

Sarah P. Suehnholz, Ritika Kundra, Hongxin Zhang, Shaleigh Smith, Moriah Nissan, Yifu Yao, Lindsay LaFave, Kinisha Gala, Linde Miles, Maria E. Arcila, Marc Ladanyi, Michael F. Berger, Ahmet Zehir, Aijaz Syed, Julia Rudolph, Paul Sabbatini, Ross Levine, Ahmet Dogan, Jianjiong Gao, David Solit, Nikolaus Schultz, Debyani Chakravarty
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 99.
DOI: https://doi.org/10.1158/1538-7445.AM2021-99
Published: 01 July 2021
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Journal Articles

Abstract 1096: Harmonization standards from the Variant Interpretation for Cancer Consortium

Alex H. Wagner, Reece K. Hart, Larry Babb, Robert R. Freimuth, Adam Coffman, Yonghao Liang, Beth Pitel, Angshumoy Roy, Matthew Brush, Jennifer Lee, Anna Lu, Thomas Coard, Shruti Rao, Deborah Ritter, Brian Walsh, Susan Mockus, Peter Horak, Ian King, Dmitriy Sonkin, Subha Madhavan, Gordana Raca, Debyani Chakravarty, Malachi Griffith, Obi L. Griffith
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 1096.
DOI: https://doi.org/10.1158/1538-7445.AM2020-1096
Published: 15 August 2020
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Journal Articles

Abstract 3222: The Virtual Molecular Tumor Board of the Variant Interpretation for Cancer Consortium: A systematic gateway connecting cancer genome interpretation and progress in genomic knowledgebases in cancer

Beth A. Pitel, Shruti Rao, Catherine Del Vecchio Fitz, Subha Madhavan, Rodrigo Dientsmann, Peter Horak, Ian King, Susan M. Mockus, Gordana Raca, Damian T. Rieke, Peter Rogan, Dmitriy Sonkin, David Tamborero, Ioannis S. Vlachos, Brian Walsh, Jeremy L. Warner, Malachi Griffith, Obi L. Griffith, Debyani Chakravarty, Alex H. Wagner
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 3222.
DOI: https://doi.org/10.1158/1538-7445.AM2020-3222
Published: 15 August 2020
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Journal Articles

Abstract 3208: OncoKB, a precision oncology knowledgebase

Sarah Suehnholz, Hongxin Zhang, Moriah Nissan, Ritika Kundra, Jing Su, Lindsay LaFave, Kinisha Gala, Chad Vanderbilt, Maria Arcila, Marc Ladanyi, Michael Berger, Ahmet Zehir, Julia E. Rudolph, Paul Sabbatini, Ross Levine, Ahmet Dogan, Jianjiong Gao, David B. Solit, Nikolaus Schultz, Debyani Chakravarty
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 3208.
DOI: https://doi.org/10.1158/1538-7445.AM2020-3208
Published: 15 August 2020
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Journal Articles

Abstract 5707: A standard operating procedure for the interpretation of oncogenicity/pathogenicity of somatic mutations

Peter Horak, Malachi Griffith, Arpad Danos, Beth A. Pitel, Subha Madhavan, Xuelu Liu, Jennifer Lee, Gordana Raca, Shirley Li, Alex H. Wagner, Shashikant Kulkarni, Obi L. Griffith, Debyani Chakravarty, Dmitriy Sonkin
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 5707.
DOI: https://doi.org/10.1158/1538-7445.AM2020-5707
Published: 15 August 2020
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Journal Articles

Abstract 3566: The long tail of significantly mutated genes in prostate cancer

Joshua Armenia, Stephanie Mullane, Jianjiong Gao, Debyani Chakravarty, Ritika Kundra, Franklin Huang, Celine Han, Dan Robinson, Levi A. Garraway, Peter Nelson, Mark Rubin, Mary-Ellen Taplin, Wassim Abida, Charles L. Sawyers, Arul M. Chinnaiyan, Philip W. Kantoff, Johann S. Bono, Nikolaus Schultz, Eliezer M. Van Allen
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 3566.
DOI: https://doi.org/10.1158/1538-7445.AM2017-3566
Published: 01 July 2017
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Journal Articles

Abstract 2608: Global integration of knowledgebases for clinical interpretation of cancer variants

Obi L. Griffith, Malachi Griffith, David Tamborero, Alex H. Wagner, Kilannin Krysiak, Catherine Del Vecchio Fitz, Debyani Chakravarty, Ethan Cerami, Olivier Elemento, Nikolaus Schultz, Adam Margolin, Nuria Lopez-Bigas
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 2608.
DOI: https://doi.org/10.1158/1538-7445.AM2017-2608
Published: 01 July 2017
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Journal Articles

Abstract 375: Oncologist use and perception of large panel next generation tumor sequencing

Alison M. Schram, Dalicia Reales, Jesse Galle, Roy Cambria, Robert Durany, Darren Feldman, Eric Sherman, Jonathan Rosenberg, Gabriella D'Andrea, Shrujal Baxi, Yelena Janjigian, William Tap, Maura Dickler, José Baselga, Barry Taylor, Debyani Chakravarty, Jianjiong Gao, Nikolaus D. Schultz, David B. Solit, Michael F. Berger, David M. Hyman
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 375.
DOI: https://doi.org/10.1158/1538-7445.AM2017-375
Published: 01 July 2017
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Journal Articles

Abstract 4627: Role of intratumoral cell heterogeneity on therapeutic efficacy in glioblastoma.

Debyani Chakravarty, Alicia Pedraza, Angela H. Liu, Jesse Cotari, Grégoire Altan-Bonnet, Cameron W. Brennan
Journal: Cancer Research
Cancer Res (2013) 73 (8_Supplement): 4627.
DOI: https://doi.org/10.1158/1538-7445.AM2013-4627
Published: 15 April 2013
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Journal Articles

Abstract #SY10-2: Pharmacological therapy of mouse models of thyroid cancer induced by oncogenic effectors in the MAPK and PI3K pathways.

James Fagin, Aime Franco, Roberta Malaguarnera, Ronald Ghossein, Debyani Chakravarty, Jeffrey Knauf
Journal: Cancer Research
Cancer Res (2009) 69 (9_Supplement): SY10-2.
Published: 01 May 2009
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