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Journal Articles

Abstract 3127: Comprehensive proteogenomic characterization of rare kidney tumors

Ginny Xiaohe Li, Yi Hsiao, Lijun Chen, Rahul Mannan, Yuping Zhang, Francesca Petralia, Hanbyul Cho, Noshad Hosseini, Anna Calinawan, Yize Li, Shankara Anand, Aniket Dagar, Yifat Geffen, Felipe V. Leprevost, Anne Le, Sean Ponce, Michael Schnaubelt, Nataly Naser Al Deen, Wagma Caravan, Andrew Houston, Chandan Kumar-Sinha, Xiaoming Wang, Seema Chugh, Gilbert S. Omenn, Daniel W. Chan, Christopher Ricketts, Rohit Mehra, Arul Chinnaiyan, Li Ding, Marcin Cieslik, Hui Zhang, Saravana M. Dhanasekaran, Alexey I. Nesvizhskii
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 3127.
https://doi.org/10.1158/1538-7445.AM2023-3127
Published: 04 April 2023
View article titled, Abstract 3127: Comprehensive proteogenomic characterization of rare kidney tumors
Journal Articles

Abstract IA-003: Proteogenomic characterizations of pancreatic ductal adenocarcinoma

Liwei Cao, Chen Huang, Daniel Cui Zhou, Yingwei Hu, Mamie Lih, Sara R. Savage, Karsten Krug, David J. Clark, Michael Schnaubelt, Lijun Chen, Felipe da Veiga Leprevost, Rodrigo Vargas Eguez, Alexey I. Nesvizhskii, D.R. Mani, Gilbert S. Omenn, Emily S. Boja, Mehdi Mesri, Ana I. Robles, Henry Rodriguez, Oliver F. Bathe, Daniel W. Chan, Ralph H. Hruban, Li Ding, Bing Zhang, Hui Zhang, Clinical Proteomic Tumor Analysis Consortium
Journal: Cancer Research
Cancer Res (2021) 81 (22_Supplement): IA-003.
https://doi.org/10.1158/1538-7445.PANCA21-IA-003
Published: 15 November 2021
View article titled, Abstract IA-003: Proteogenomic characterizations of pancreatic ductal adenocarcinoma
Journal Articles

Abstract 17: Proteogenomic characterization of pancreatic ductal adenocarcinoma

Liwei Cao, Chen Huang, Daniel Cui Zhou, Oliver F. Bathe, Daniel W. Chan, Ralph H. Hruban, Li Ding, Bing Zhang, Hui Zhang, Clinical Proteomic Tumor Analysis Consortium Investigators
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 17.
https://doi.org/10.1158/1538-7445.AM2021-17
Published: 01 July 2021
View article titled, Abstract 17: Proteogenomic characterization of pancreatic ductal adenocarcinoma
Journal Articles

Abstract 5118: Proteogenomics characterization of HPV-negative head and neck squamous cell carcinomas

Chen Huang, Lijun Chen, Yize Li, Sara Savage, Michael Schnaubelt, Felipe V. Leprevost, Marcin Cieslik, Yongchao Dou, Bo Wen, Jonathan T. Lei, Kai Li, Eric Jaehnig, Zhiao Shi, Meenakshi Anurag, Jianbo Pan, Yingwei Hu, Rodrigo V. Eguez, David J. Clark, Matthew Wyczalkowski, Saravana M. Dhanasekaran, Chandan Kumar, Antonio Colaprico, Karsten Krug, Michael Gillette, D. R. Mani, Seungyeul Yoo, Jiayi Ji, Xiaoyu Song, Weiping Ma, Xi Steven Chen, Alex Pico, Nathan J. Edwards, Scott D. Jewell, Mathangi Thiagarajan, Emily S. Boja, Henry Rodriguez, Andrew Sikora, Pei Wang, Matthew Ellis, Gilbert S. Omenn, Li Ding, Alexey I. Nesvizhskii, Adel K. EI-Naggar, Daniel W. Chan, Hui Zhang, Bing Zhang, Clinical Proteomic Tumor Analysis Consortium
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 5118.
https://doi.org/10.1158/1538-7445.AM2020-5118
Published: 15 August 2020
View article titled, Abstract 5118: Proteogenomics characterization of HPV-negative head and neck squamous cell carcinomas
Journal Articles

Abstract B1-26: NetFill: A network-based method to identify a parsimonious set of mediators to link mRNA and protein signatures using existing knowledge

Li Chen, Bai Zhang, Hui Zhang, Yue Wang, Daniel W. Chan, Zhen Zhang
Journal: Cancer Research
Cancer Res (2015) 75 (22_Supplement_2): B1-26.
https://doi.org/10.1158/1538-7445.COMPSYSBIO-B1-26
Published: 15 November 2015
View article titled, Abstract B1-26: NetFill: A network-based method to identify a parsimonious set of mediators to link mRNA and protein signatures using existing knowledge
Journal Articles

Abstract 4816: OVA1: An in vitro diagnostic multivariate index assay for preoperative assessment of ovarian tumors

Zhen Zhang, Lori Sokoll, Chris Desimone, Leigh Seamon, Rachel Ware, Scott Goodrich, Iwona Podzielinski, Alan Smith, Joseph Santoso, John R. van Nagell, Daniel W. Chan, Frederick R. Ueland
Journal: Cancer Research
Cancer Res (2010) 70 (8_Supplement): 4816.
https://doi.org/10.1158/1538-7445.AM10-4816
Published: 15 April 2010
View article titled, Abstract 4816: OVA1: An in vitro diagnostic multivariate index assay for preoperative assessment of ovarian tumors
Journal Articles

Initial Analyses of Colon Cancer–Specific Antigen (CCSA)-3 and CCSA-4 as Colorectal Cancer–Associated Serum Markers

Eddy S. Leman, Robert E. Schoen, Joel L. Weissfeld, Grant W. Cannon, Lori J. Sokoll, Daniel W. Chan, Robert H. Getzenberg
Journal: Cancer Research
Cancer Res (2007) 67 (12): 5600–5605.
https://doi.org/10.1158/0008-5472.CAN-07-0649
Published: 15 June 2007
View article titled, Initial Analyses of Colon Cancer–Specific Antigen (CCSA)-3 and CCSA-4 as Colorectal Cancer–Associated Serum Markers
Open the PDF for Initial Analyses of Colon Cancer–Specific Antigen (CCSA)-3 and CCSA-4 as Colorectal Cancer–Associated Serum Markers in another window
Includes: Supplementary data
Journal Articles

Independent validation of seven biomarkers for detection of ovarian cancer from benign pelvic masses

Zhen Zhang, Claus Høgdall, Estrid Høgdall, Svend Aage Engelholm, Zheng Wang, Christine Yip, Xiao-Ying Meng, Vanitha Thulasiraman, Anette Lykke Petri, Lene Lundvall, Signe Risum, Daniel W. Chan, Eric T. Fung
Journal: Cancer Research
Cancer Res (2006) 66 (8_Supplement): 670–671.
Published: 15 April 2006
View article titled, Independent validation of seven biomarkers for detection of ovarian cancer from benign pelvic masses
Journal Articles

Discovery of serum proteomic biomarkers for the early detection of breast cancer- a multi-center study

Jinong Li, C. Nicole Rosenzweig, Zhen Zhang, Rosaria Orlandi, Ettore Seregni, Daniele Morelli, Gordon B. Mills, Daniel W. Chan
Journal: Cancer Research
Cancer Res (2006) 66 (8_Supplement): 672.
Published: 15 April 2006
View article titled, Discovery of serum proteomic biomarkers for the early detection of breast cancer- a multi-center study
Journal Articles

Serum biomarkers for assessing risk of prostate cancer recurrence after radical retropubic prostatectomy.

Zhen Zhang, C. Nicole Ronsenzweig, Lorr J. Sokoll, Carol Cheli, Georg Bartsch, Richard J. Babaian, Wolfgang Horninger, Herbert A. Fritsche, Jr., Samir Taneja, Herbert Lepor, Stacey J. Childs, Thomas A. Stamey, Michael Brawer, Alan W. Partin, Eric T. Fung, Daniel W. Chan
Journal: Cancer Research
Cancer Res (2006) 66 (8_Supplement): 1240.
Published: 15 April 2006
View article titled, Serum biomarkers for assessing risk of prostate cancer recurrence after radical retropubic prostatectomy.
Journal Articles

Characterization of post-translational modifications of human serum ITIH4 using immunoprecipitation followed by mass spectrometry.

Jin Song, Eric T. Fung, Zheng Wang, Xiao-Ying Meng, Daniel W. Chan, Zhen Zhang
Journal: Cancer Research
Cancer Res (2005) 65 (9_Supplement): 94.
Published: 01 May 2005
View article titled, Characterization of post-translational modifications of human serum ITIH4 using immunoprecipitation followed by mass spectrometry.
Journal Articles

Surrogate endpoints in the management of acute myeloid leukemia

Jing Zhao, Xavier Thomas, Daniel W. Chan, Jinong Li
Journal: Cancer Research
Cancer Res (2005) 65 (9_Supplement): 1150–1151.
Published: 01 May 2005
View article titled, Surrogate endpoints in the management of acute myeloid leukemia
Journal Articles

Identification of proteins associated with prostate cancer recurrence using proteomics approaches

C. Nicole White, Zhen Zhang, Derek Chappell, Jason M. Rosenzweig, Lori J. Sokoll, Alan W. Partin, Daniel W. Chan
Journal: Cancer Research
Cancer Res (2005) 65 (9_Supplement): 1131–1132.
Published: 01 May 2005
View article titled, Identification of proteins associated with prostate cancer recurrence using proteomics approaches
Journal Articles

Biomarker discovery for breast cancer in nipple aspiration and ductal lavage fluid

Jinong Li, Xiaodong Yu, Jing Zhao, Henry M. Kuerer, Julie Lane, Syed Ali, Eric Schilling, Savitri Krishnamurthy, Seema A. Khan, Saraswati Sukumar, Daniel W. Chan
Journal: Cancer Research
Cancer Res (2005) 65 (9_Supplement): 1136–1137.
Published: 01 May 2005
View article titled, Biomarker discovery for breast cancer in nipple aspiration and ductal lavage fluid
Journal Articles

Low molecular weight proteome for biomarker discovery in human serum

Xiaodong Yu, Xavier Thomas, Daniel W. Chan, Jinong Li
Journal: Cancer Research
Cancer Res (2005) 65 (9_Supplement): 1131.
Published: 01 May 2005
View article titled, Low molecular weight proteome for biomarker discovery in human serum
Journal Articles

A potential biomarker for prostate cancer detection and tumor grade prediction from a multicenter clinical proteomics study

Zhen Zhang, C. Nicole White, Carol Cheli, Eric T. Fung, Lori J. Sokoll, Alan W. Partin, Daniel W. Chan
Journal: Cancer Research
Cancer Res (2005) 65 (9_Supplement): 742–743.
Published: 01 May 2005
View article titled, A potential biomarker for prostate cancer detection and tumor grade prediction from a multicenter clinical proteomics study
Journal Articles

Three Biomarkers Identified from Serum Proteomic Analysis for the Detection of Early Stage Ovarian Cancer

Zhen Zhang, Robert C. Bast, Jr., Yinhua Yu, Jinong Li, Lori J. Sokoll, Alex J. Rai, Jason M. Rosenzweig, Bonnie Cameron, Young Y. Wang, Xiao-Ying Meng, Andrew Berchuck, Carolien van Haaften-Day, Neville F. Hacker, Henk W. A. de Bruijn, Ate G. J. van der Zee, Ian J. Jacobs, Eric T. Fung, Daniel W. Chan
Journal: Cancer Research
Cancer Res (2004) 64 (16): 5882–5890.
https://doi.org/10.1158/0008-5472.CAN-04-0746
Published: 16 August 2004
View article titled, Three Biomarkers Identified from Serum Proteomic Analysis for the Detection of Early Stage Ovarian Cancer
Open the PDF for Three Biomarkers Identified from Serum Proteomic Analysis for the Detection of Early Stage Ovarian Cancer in another window
Journal Articles

Protein identification and immunoassay evaluation of a panel of biomarkers discovered through proteomic profiling for the detection of ovarian cancer

Zhen Zhang, Lori J. Sokoll, Jason M. Rosenzweig, Xiao-Ying Meng, Eric T. Fung, Daniel W. Chan
Journal: Cancer Research
Cancer Res (2004) 64 (7_Supplement): 242.
Published: 01 April 2004
View article titled, Protein identification and immunoassay evaluation of a panel of biomarkers discovered through proteomic profiling for the detection of ovarian cancer
Journal Articles

Identification of distinct protein expression patterns in bilateral matched pair breast ductal lavage fluid specimens from women with unilateral breast cancer

Jinong Li, Nicole White, Jing Zhao, Julie Lane, Ted Tsangaris, Syed Ali, Pete Argani, Saraswati Sukumar, Daniel W. Chan
Journal: Cancer Research
Cancer Res (2004) 64 (7_Supplement): 240.
Published: 01 April 2004
View article titled, Identification of distinct protein expression patterns in bilateral matched pair breast ductal lavage fluid specimens from women with unilateral breast cancer
Journal Articles

Identification of SELDI-TOF over-expressed 17 kD protein in the Dunning metastatic prostate tumor model as Histone 2B (H2B).

Robert W. Veltri, Mathew B. Gretzer, Gunjan Malik, Michael Ward, Bao-Ling Adam, O. John Semmes, Cameron Van Rootselaar, Jason M. Rosenzweig, Daniel W. Chan, Alan W. Partin
Journal: Cancer Research
Cancer Res (2004) 64 (7_Supplement): 553.
Published: 01 April 2004
View article titled, Identification of SELDI-TOF over-expressed 17 kD protein in the Dunning metastatic prostate tumor model as Histone 2B (H2B).