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Journal Articles

Abstract 7654: Tertiary lymphoid structure associates with poor prognosis in locally advanced esophageal squamous cell carcinoma treated with neoadjuvant chemoradiotherapy

Ta-Chen Huang, Cher-Wei Liang, Yu-I Li, Jhe-Cyuan Guo, Chia-Chi Lin, Jang-Ming Lee, Yin-Kai Chao, Chih-Hung Hsu
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 7654.
https://doi.org/10.1158/1538-7445.AM2024-7654
Published: 22 March 2024
View article titled, Abstract 7654: Tertiary lymphoid structure associates with poor prognosis in locally advanced esophageal squamous cell carcinoma treated with neoadjuvant chemoradiotherapy
Journal Articles

Abstract 2211: The prognostic role of tertiary lymphoid structure (TLS) in locally advanced esophageal squamous cell carcinoma (ESCC)

Ta-Chen Huang, Cher-Wei Liang, Yu-I Li, Jhe-Cyuan Guo, Chia-Chi Lin, Jang-Ming Lee, Yin-Kai Chao, Chih-Hung Hsu
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 2211.
https://doi.org/10.1158/1538-7445.AM2023-2211
Published: 04 April 2023
View article titled, Abstract 2211: The prognostic role of tertiary lymphoid structure (TLS) in locally advanced esophageal squamous cell carcinoma (ESCC)
Journal Articles

Abstract P2-23-01: Patient-derived xenografts allow deconvolution of single agent and combination chemotherapy responses in triple-negative breast cancer

Jonathan T. Lei, Chen Huang, Ramakrishnan R. Srinivasan, Suhas Vasaikar, Lacey E. Dobrolecki, Alaina N. Lewis, Na Zhao, Jin Cao, Susan G. Hilsenbeck, C. Kent Osborne, Mothaffar Rimawi, Matthew J. Ellis, Varduhi Petrosyan, Alexander B. Saltzman, Anna Malovannaya, John D. Landua, Bo Wen, Antrix Jain, Gerburg M. Wulf, Shunqiang Li, Daniel C. Kraushaar, Tao Wang, Xi Chen, Gloria V. Echeverria, Meenakshi Anurag, Bing Zhang, Michael T. Lewis
Journal: Cancer Research
Cancer Res (2023) 83 (5_Supplement): P2-23-01.
https://doi.org/10.1158/1538-7445.SABCS22-P2-23-01
Published: 01 March 2023
View article titled, Abstract P2-23-01: Patient-derived xenografts allow deconvolution of single agent and combination chemotherapy responses in triple-negative breast cancer
Journal Articles

Abstract P5-07-01: Proteogenomic analysis of differential chemotherapy responses in patient-derived xenografts of triple-negative breast cancer

Jonathan T Lei, Chen Huang, Ramakrishnan R Srinivasan, Suhas Vasaikar, Lacey E Dobrolecki, Alaina N Lewis, Christina Sallas, Susan G Hilsenbeck, C. Kent Osborne, Mothaffar F Rimawi, Matthew J Ellis, Varduhi Petrosyan, Alexander B Saltzman, Anna Malovannaya, Gerburg Wulf, Daniel C Kraushaar, Tao Wang, Xi Chen, Gloria V Echeverria, Meenakshi Anurag, Bing Zhang, Michael T Lewis
Journal: Cancer Research
Cancer Res (2022) 82 (4_Supplement): P5-07-01.
https://doi.org/10.1158/1538-7445.SABCS21-P5-07-01
Published: 15 February 2022
View article titled, Abstract P5-07-01: Proteogenomic analysis of differential chemotherapy responses in patient-derived xenografts of triple-negative breast cancer
Journal Articles

Abstract IA-003: Proteogenomic characterizations of pancreatic ductal adenocarcinoma

Liwei Cao, Chen Huang, Daniel Cui Zhou, Yingwei Hu, Mamie Lih, Sara R. Savage, Karsten Krug, David J. Clark, Michael Schnaubelt, Lijun Chen, Felipe da Veiga Leprevost, Rodrigo Vargas Eguez, Alexey I. Nesvizhskii, D.R. Mani, Gilbert S. Omenn, Emily S. Boja, Mehdi Mesri, Ana I. Robles, Henry Rodriguez, Oliver F. Bathe, Daniel W. Chan, Ralph H. Hruban, Li Ding, Bing Zhang, Hui Zhang, Clinical Proteomic Tumor Analysis Consortium
Journal: Cancer Research
Cancer Res (2021) 81 (22_Supplement): IA-003.
https://doi.org/10.1158/1538-7445.PANCA21-IA-003
Published: 15 November 2021
View article titled, Abstract IA-003: Proteogenomic characterizations of pancreatic ductal adenocarcinoma
Journal Articles

Abstract 17: Proteogenomic characterization of pancreatic ductal adenocarcinoma

Liwei Cao, Chen Huang, Daniel Cui Zhou, Oliver F. Bathe, Daniel W. Chan, Ralph H. Hruban, Li Ding, Bing Zhang, Hui Zhang, Clinical Proteomic Tumor Analysis Consortium Investigators
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 17.
https://doi.org/10.1158/1538-7445.AM2021-17
Published: 01 July 2021
View article titled, Abstract 17: Proteogenomic characterization of pancreatic ductal adenocarcinoma
Journal Articles

Abstract 2992: Proteogenomic characterization of triple-negative breast cancer patient-derived xenografts reveals molecular correlates of differential chemotherapy response and potential therapeutic targets to overcome resistance

Jonathan T. Lei, Chen Huang, Ramakrishnan R. Srinivasan, Suhas Vasaikar, Lacey E. Dobrolecki, Alaina N. Lewis, Christina Sallas, Susan G. Hilsenbeck, C Kent Osborne, Mothaffar F. Rimawi, Matthew J. Ellis, Varduhi Petrosyan, Alexander B. Saltzman, Anna Malovannaya, Gerburg Wulf, Daniel C. Kraushaar, Tao Wang, Gloria V. Echeverria, Bing Zhang, Michael T. Lewis
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2992.
https://doi.org/10.1158/1538-7445.AM2021-2992
Published: 01 July 2021
View article titled, Abstract 2992: Proteogenomic characterization of triple-negative breast cancer patient-derived xenografts reveals molecular correlates of differential chemotherapy response and potential therapeutic targets to overcome resistance
Journal Articles

Abstract 5118: Proteogenomics characterization of HPV-negative head and neck squamous cell carcinomas

Chen Huang, Lijun Chen, Yize Li, Sara Savage, Michael Schnaubelt, Felipe V. Leprevost, Marcin Cieslik, Yongchao Dou, Bo Wen, Jonathan T. Lei, Kai Li, Eric Jaehnig, Zhiao Shi, Meenakshi Anurag, Jianbo Pan, Yingwei Hu, Rodrigo V. Eguez, David J. Clark, Matthew Wyczalkowski, Saravana M. Dhanasekaran, Chandan Kumar, Antonio Colaprico, Karsten Krug, Michael Gillette, D. R. Mani, Seungyeul Yoo, Jiayi Ji, Xiaoyu Song, Weiping Ma, Xi Steven Chen, Alex Pico, Nathan J. Edwards, Scott D. Jewell, Mathangi Thiagarajan, Emily S. Boja, Henry Rodriguez, Andrew Sikora, Pei Wang, Matthew Ellis, Gilbert S. Omenn, Li Ding, Alexey I. Nesvizhskii, Adel K. EI-Naggar, Daniel W. Chan, Hui Zhang, Bing Zhang, Clinical Proteomic Tumor Analysis Consortium
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 5118.
https://doi.org/10.1158/1538-7445.AM2020-5118
Published: 15 August 2020
View article titled, Abstract 5118: Proteogenomics characterization of HPV-negative head and neck squamous cell carcinomas
Journal Articles

Abstract P1-03-02: Histoepigenetic characterization of breast cancer patient derived xenografts (PDX) implicates epithelial-stromal interactions in differential chemotherapy resistance and PDX engraftment

Varduhi Petrosyan, Chen Huang, Ramakrishnan R Srinivasan, Lacey E Dobrolecki, Christina Sallas, Alaina N Lewis, Tao Wang, Bing Zhang, Aleksandar Milosavljevic, Michael T Lewis
Journal: Cancer Research
Cancer Res (2020) 80 (4_Supplement): P1-03-02.
https://doi.org/10.1158/1538-7445.SABCS19-P1-03-02
Published: 15 February 2020
View article titled, Abstract P1-03-02: Histoepigenetic characterization of breast cancer patient derived xenografts (PDX) implicates epithelial-stromal interactions in differential chemotherapy resistance and PDX engraftment
Journal Articles

Abstract GS2-05: Microscaled proteogenomic methods for precision oncology

Shankha Satpathy, Eric Jaehnig, Krug Karsten, Beom-Jun Kim, Alexander Saltzman, Doug Chan, Kimberly Holloway, Meenakshi Anurag, Chen Huang, Purba Singh, Ari Gao, Noel Namai, Yongchao Dou, Bo Wen, Suhas Vasaikar, David Mutch, Mark Watson, Cynthia Ma, Foluso Ademuyiwa, Mothaffar Rimawi, Jeremy Hoog, Samuel Jacobs, Anna Malovannaya, Terry Hyslop, D.R Mani, Charles Perou, George Miles, Bing Zhang, Michael Gillette, Steven Carr, Matthew Ellis
Journal: Cancer Research
Cancer Res (2020) 80 (4_Supplement): GS2-05.
https://doi.org/10.1158/1538-7445.SABCS19-GS2-05
Published: 15 February 2020
View article titled, Abstract GS2-05: Microscaled proteogenomic methods for precision oncology
Journal Articles

Correction: Hypoxic Tumor-Derived Exosomal miR-301a Mediates M2 Macrophage Polarization via PTEN/PI3Kγ to Promote Pancreatic Cancer Metastasis

Xiaofeng Wang, Guangtao Luo, Kundong Zhang, Jun Cao, Chen Huang, Tao Jiang, Bingya Liu, Liping Su, Zhengjun Qiu
Journal: Cancer Research
Cancer Res (2020) 80 (4): 922.
https://doi.org/10.1158/0008-5472.CAN-19-3872
Published: 14 February 2020
View article titled, Correction: Hypoxic Tumor-Derived Exosomal miR-301a Mediates M2 Macrophage Polarization via PTEN/PI3Kγ to Promote Pancreatic Cancer Metastasis
Open the PDF for Correction: Hypoxic Tumor-Derived Exosomal miR-301a Mediates M2 Macrophage Polarization via PTEN/PI3Kγ to Promote Pancreatic Cancer Metastasis in another window
Journal Articles

Abstract A60: Integrated proteogenomic characterization of pancreatic ductal adenocarcinoma

Kyung Cho Cho, Ralph Hruban, Hui Zhang, Chen Huang, Bing Zhang, Daniel Cui Zhou, Li Ding, Emily Boja, Investigators from the Clinical Proteomic Tumor Analysis Consortium
Journal: Cancer Research
Cancer Res (2019) 79 (24_Supplement): A60.
https://doi.org/10.1158/1538-7445.PANCA19-A60
Published: 13 December 2019
View article titled, Abstract A60: Integrated proteogenomic characterization of pancreatic ductal adenocarcinoma
Journal Articles

Chromosome 12p Amplification in Triple-Negative/BRCA1-Mutated Breast Cancer Associates with Emergence of Docetaxel Resistance and Carboplatin Sensitivity

Jorge Gómez-Miragaya, Ander Díaz-Navarro, Raul Tonda, Sergi Beltran, Luis Palomero, Marta Palafox, Lacey E. Dobrolecki, Chen Huang, Suhas Vasaikar, Bing Zhang, Gerburg M. Wulf, Alejandro Collado-Sole, Eva M. Trinidad, Purificación Muñoz, Laia Paré, Aleix Prat, Alejandra Bruna, Carlos Caldas, Joaquín Arribas, María Teresa Soler-Monso, Anna Petit, Judith Balmaña, Cristina Cruz, Violeta Serra, Miguel Angel Pujana, Michael T. Lewis, Xose S. Puente, Eva González-Suárez
Journal: Cancer Research
Cancer Res (2019) 79 (16): 4258–4270.
https://doi.org/10.1158/0008-5472.CAN-18-3835
Published: 15 August 2019
View article titled, Chromosome 12p Amplification in Triple-Negative/<em>BRCA1-</em>Mutated Breast Cancer Associates with Emergence of Docetaxel Resistance and Carboplatin Sensitivity
Open the PDF for Chromosome 12p Amplification in Triple-Negative/<em>BRCA1-</em>Mutated Breast Cancer Associates with Emergence of Docetaxel Resistance and Carboplatin Sensitivity in another window
Includes: Supplementary data
Journal Articles

Abstract 140: Comprehensive analysis of immune evasion in breast cancer by single-cell RNA-seq

Jianhua Yin, Hanlin Zhou, Chen Yan, Ruqian lv, Ting Wang, Chenyang He, Chen Huang, Yong Hou, Shida Zhu, Ling Wang, Michael Dean, Kui Wu, Hong Hu, Guibo Li
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 140.
https://doi.org/10.1158/1538-7445.AM2019-140
Published: 01 July 2019
View article titled, Abstract 140: Comprehensive analysis of immune evasion in breast cancer by single-cell RNA-seq
Journal Articles

Abstract LB-006: Proteogenomic characterization of human colon cancer reveals new therapeutic opportunities

Bing Zhang, Suhas Vasaikar, Chen Huang, Xiaojing Wang, Vladislav A. Petyuk, Sara R. Savage, Bo Wen, Yongchao Dou, Yun Zhang, Zhiao Shi, Osama A. Arshad, Marina A. Gritsenko, Lisa J. Zimmerman, Jason E. McDermott, Therese R. Clauss, Ronald J. Moore, Rui Zhao, Matthew E. Monroe, Yi-Ting Wang, Matthew C. Chambers, Robbert J. Slebos, Ken S. Lau, Qianxing Mo, Li Ding, Matthew Ellis, Mathangi Thiagarajan, Christopher R. Kinsinger, Henry Rodriguez, Richard D. Smith, Karin D. Rodland, Daniel C. Liebler, Tao Liu, CPTAC Investigators
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): LB-006.
https://doi.org/10.1158/1538-7445.AM2019-LB-006
Published: 01 July 2019
View article titled, Abstract LB-006: Proteogenomic characterization of human colon cancer reveals new therapeutic opportunities
Journal Articles

Hypoxic Tumor-Derived Exosomal miR-301a Mediates M2 Macrophage Polarization via PTEN/PI3Kγ to Promote Pancreatic Cancer Metastasis

Xiaofeng Wang, Guangtao Luo, Kundong Zhang, Jun Cao, Chen Huang, Tao Jiang, Bingya Liu, Liping Su, Zhengjun Qiu
Journal: Cancer Research
Series: Author Choice
Cancer Res (2018) 78 (16): 4586–4598.
https://doi.org/10.1158/0008-5472.CAN-17-3841
Published: 14 August 2018
View article titled, Hypoxic Tumor-Derived Exosomal miR-301a Mediates M2 Macrophage Polarization via PTEN/PI3Kγ to Promote Pancreatic Cancer Metastasis
Open the PDF for Hypoxic Tumor-Derived Exosomal miR-301a Mediates M2 Macrophage Polarization via PTEN/PI3Kγ to Promote Pancreatic Cancer Metastasis in another window
Includes: Supplementary data
Journal Articles

Abstract 2635: Differential prognostic implications of programmed death-ligand 1 expression on tumor cells and tumor-infiltrating immune cells in patients with locally advanced esophageal squamous cell carcinoma treated with preoperative chemoradiotherapy

Ta-Chen Huang, Cher-Wei Liang, Chia-Chi Lin, Ya-Jhen Chen, Kuan-Ling Lin, Chih-Hung Hsu
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 2635.
https://doi.org/10.1158/1538-7445.AM2018-2635
Published: 01 July 2018
View article titled, Abstract 2635: Differential prognostic implications of programmed death-ligand 1 expression on tumor cells and tumor-infiltrating immune cells in patients with locally advanced esophageal squamous cell carcinoma treated with preoperative chemoradiotherapy
Journal Articles

Abstract 85: Oleic acid promotes head and neck squamous cell carcinoma anoikis resistance and metastasis via ANGPTL4/fibronectin pathway

Chih-Jie Shen, Shih-Hung Chan, Chung-Ta Lee, Wan-Chen Huang, Jhih-Peng Tsai, Kwang-Yu Chang, Wen-Chang Chang, Ben-Kuen Chen
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 85.
https://doi.org/10.1158/1538-7445.AM2018-85
Published: 01 July 2018
View article titled, Abstract 85: Oleic acid promotes head and neck squamous cell carcinoma anoikis resistance and metastasis via ANGPTL4/fibronectin pathway
Journal Articles

Abstract 2616: Upregulation of program death ligand 1 expression after a single cycle of chemotherapy is associated with inferior survival in patients with local advanced esophageal squamous cell carcinoma treated with preoperative chemoradiotherapy

Ta-Chen Huang, Cher-Wei Liang, Chia-Chi Lin, Ya-Jhen Chen, Kuan-Ling Lin, Ann-Lii Cheng, Chin-Hung Hsu
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 2616.
https://doi.org/10.1158/1538-7445.AM2017-2616
Published: 01 July 2017
View article titled, Abstract 2616: Upregulation of program death ligand 1 expression after a single cycle of chemotherapy is associated with inferior survival in patients with local advanced esophageal squamous cell carcinoma treated with preoperative chemoradiotherapy
Journal Articles

Abstract 2409: Loss of L1TD1 suppresses Notch1 induced LINE1 methylation and genomic stability

Chia-Chen Chiu, Wei-Chen Huang, Kuan-Der Lee, Chih-Cheng Chen, Chia-Chen Hsu, Mei-Ling Kang, Yu-Wei Leu, Shu-Huei Hsiao
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 2409.
https://doi.org/10.1158/1538-7445.AM2017-2409
Published: 01 July 2017
View article titled, Abstract 2409: Loss of <em>L1TD1</em> suppresses Notch1 induced <em>LINE1</em> methylation and genomic stability