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Carlo C. Maley
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Journal Articles

Abstract 7509: Path-Omics: Elevated plasma cell infiltration into aneuploid epithelium predicts Barrett’s esphagus progression to adenocarcinoma

Free
Caner Ercan, Xiaoxi Pan, Thomas G. Paulson, Matthew D. Stachler, Carlo C. Maley, Yinyin Yuan
Journal: Cancer Research
Cancer Res (2025) 85 (8_Supplement_1): 7509.
https://doi.org/10.1158/1538-7445.AM2025-7509
Published: 21 April 2025
View articletitled, Abstract 7509: Path-Omics: Elevated plasma cell infiltration into aneuploid epithelium predicts Barrett’s esphagus progression to adenocarcinoma
Journal Articles

Resistance Management for Cancer: Lessons from Farmers

Open Access
Sareh Seyedi, Valerie K. Harris, Stefania E. Kapsetaki, Shrinath Narayanan, Daniel Saha, Zachary Compton, Rezvan Yousefi, Alexander May, Efe Fakir, Amy M. Boddy, Marco Gerlinger, Christina Wu, Lida Mina, Silvie Huijben, Dawn H. Gouge, Luis Cisneros, Peter C. Ellsworth, Carlo C. Maley
Journal: Cancer Research
Cancer Res (2024) 84 (22): 3715–3727.
https://doi.org/10.1158/0008-5472.CAN-23-3374
Published: 15 November 2024
View articletitled, Resistance Management for Cancer: Lessons from Farmers
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Journal Articles

Abstract 6184: A novel approach to Barrett's esophagus risk stratification: Whole-slide image analysis for aneuploidy detection

Free
Caner Ercan, Xiaoxi Pan, Thomas G. Paulson, Matthew D. Stachler, Carlo C. Maley, Yinyin Yuan
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 6184.
https://doi.org/10.1158/1538-7445.AM2024-6184
Published: 22 March 2024
View articletitled, Abstract 6184: A novel approach to Barrett's esophagus risk stratification: Whole-slide image analysis for aneuploidy detection
Journal Articles

Abstract PR009: Tick tock trees: Reconstructing the evolutionary dynamics of human tissues using fluctuating methylation clocks

Free
Diego Mallo, Pablo Bousquets-Muñoz, Heather E. Grant, Darryl Shibata, Trevor A. Graham, Carlo C. Maley, Calum Gabbutt
Journal: Cancer Research
Cancer Res (2024) 84 (3_Supplement_2): PR009.
https://doi.org/10.1158/1538-7445.CANEVOL23-PR009
Published: 01 February 2024
View articletitled, Abstract PR009: Tick tock trees: Reconstructing the evolutionary dynamics of human tissues using fluctuating methylation clocks
Journal Articles

Abstract B004: PISCA-box: A user-friendly interface for Phylogenetic Inference using Somatic Chromosomal Alterations (PISCA)

Free
Heather E. Grant, Rachel Alcraft, Pablo Bousquets-Muñoz, Calum Gabbutt, Alison Berner, Mehmet Yalchin, Carlo C. Maley, Trevor A. Graham, Diego Mallo
Journal: Cancer Research
Cancer Res (2024) 84 (3_Supplement_2): B004.
https://doi.org/10.1158/1538-7445.CANEVOL23-B004
Published: 01 February 2024
View articletitled, Abstract B004: PISCA-box: A user-friendly interface for Phylogenetic Inference using Somatic Chromosomal Alterations (PISCA)
Journal Articles

Abstract A038: Evaluating DCIS progression: A comparative analysis of CNA predictive power derived from lpWGS and WES data

Free
Manasa Iyer, Diego Mallo, Carlo C. Maley, Angelo Fortunato, Luis Cisneros, Lorraine M. King, Marc D. Ryser, Joseph Y. Lo, Allison Hall, Jeffrey R. Marks, Shelley Hwang
Journal: Cancer Research
Cancer Res (2024) 84 (3_Supplement_2): A038.
https://doi.org/10.1158/1538-7445.CANEVOL23-A038
Published: 01 February 2024
View articletitled, Abstract A038: Evaluating DCIS progression: A comparative analysis of CNA predictive power derived from lpWGS and WES data
Journal Articles

Abstract A017: Computational and mouse models of adaptive therapy with multiple drugs in breast cancer

Free
Carlo C. Maley, Sareh Seyedi, Daniel Saha, Alexander Anderson
Journal: Cancer Research
Cancer Res (2024) 84 (3_Supplement_2): A017.
https://doi.org/10.1158/1538-7445.CANEVOL23-A017
Published: 01 February 2024
View articletitled, Abstract A017: Computational and mouse models of adaptive therapy with multiple drugs in breast cancer
Journal Articles

Stronger Together: Cancer Clones Cooperate to Alleviate Growth Barriers in Critical Cancer Progression Transitions

Available to Purchase
Zachary T. Compton, Diego Mallo, Carlo C. Maley
Journal: Cancer Research
Cancer Res (2023) 83 (24): 4013–4014.
https://doi.org/10.1158/0008-5472.CAN-23-3255
Published: 15 December 2023
View articletitled, Stronger Together: Cancer Clones Cooperate to Alleviate Growth Barriers in Critical Cancer Progression Transitions
Open the PDF for Stronger Together: Cancer Clones Cooperate to Alleviate Growth Barriers in Critical Cancer Progression Transitions in another window
Journal Articles

Abstract 3130: Extrachromosomal DNA in the cancerous transformation of Barrett’s esophagus

Free
Jens Luebeck, Alvin W. Ng, Patricia C. Galipeau, Xiaohong Li, Annalise Katz-Summercorn, Hoon Kim, Sriganesh Jammula, Yudou He, Roel Verhaak, Carlo C. Maley, Ludmil B. Alexandrov, Rebecca C. Fitzgerald, Thomas G. Paulson, Howard Y. Chang, Sihan Wu, Vineet Bafna, Paul S. Mischel
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 3130.
https://doi.org/10.1158/1538-7445.AM2023-3130
Published: 04 April 2023
View articletitled, Abstract 3130: Extrachromosomal DNA in the cancerous transformation of Barrett’s esophagus
Journal Articles

Abstract PR02: Inferring the evolutionary dynamics of ductal carcinoma in situ through multi-regional sequencing and mathematical modeling

Free
Marc D. Ryser, Inmaculada C. Sorribes, Matthew Greenwald, Ethan Wu, Allison Hall, Diego Mallo, Lorraine M. King, Timothy Hardman, Lunden Simpson, Carlo C. Maley, Jeffrey R. Marks, Darryl Shibata, E. Shelley Hwang
Journal: Cancer Research
Cancer Res (2020) 80 (21_Supplement): PR02.
https://doi.org/10.1158/1538-7445.TUMHET2020-PR02
Published: 03 November 2020
View articletitled, Abstract PR02: Inferring the evolutionary dynamics of ductal carcinoma in situ through multi-regional sequencing and mathematical modeling
Journal Articles

Abstract 2502: Genetic and functional heterogeneity of DCIS as predictors of invasive cancer

Free
Angelo Fortunato, Diego Mallo, Lorraine King, Timothy Hardman, Allison Hall, Jeffrey R. Marks, Shelley Shelley Hwang, Carlo C. Maley
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 2502.
https://doi.org/10.1158/1538-7445.AM2020-2502
Published: 15 August 2020
View articletitled, Abstract 2502: Genetic and functional heterogeneity of DCIS as predictors of invasive cancer
Journal Articles

Abstract 2683: Ductal carcinoma in situ is a multiclonal disease

Free
Marc D. Ryser, Inmaculada C. Sorribes, Matthew Greenwald, Allison Hall, Diego Mallo, Lorraine M. King, Timothy Hardman, Lunden Simpson, Carlo C. Maley, Jeffrey R. Marks, Darryl Shibata, E. Shelley Hwang
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 2683.
https://doi.org/10.1158/1538-7445.AM2020-2683
Published: 15 August 2020
View articletitled, Abstract 2683: Ductal carcinoma in situ is a multiclonal disease
Journal Articles

Modeling the Subclonal Evolution of Cancer Cell Populations

Free
Diego Chowell, James Napier, Rohan Gupta, Karen S. Anderson, Carlo C. Maley, Melissa A. Wilson Sayres
Journal: Cancer Research
Cancer Res (2018) 78 (3): 830–839.
https://doi.org/10.1158/0008-5472.CAN-17-1229
Published: 31 January 2018
View articletitled, Modeling the Subclonal Evolution of Cancer Cell Populations
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Includes: Supplementary data
Journal Articles

Abstract 2921: Integrated exome- and single cell RNA-sequencing reveals a clone's genomic instability and multifaceted fitness

Free
Noemi Andor, Carlo C. Maley, Hanlee P. Ji
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 2921.
https://doi.org/10.1158/1538-7445.AM2017-2921
Published: 01 July 2017
View articletitled, Abstract 2921: Integrated exome- and single cell RNA-sequencing reveals a clone's genomic instability and multifaceted fitness
Journal Articles

Abstract 2153: Elephant p53 (EP53) expression induces apoptosis of human cancer cells

Free
Lisa M. Abegglen, Lauren N. Donovan, Genevieve Couldwell, Rosann Robinson, Cristhian Toruno, Mor Goldfeder, Wendy K. Kiso, Dennis L. Schmitt, Aleah F. Caulin, Katrin P. Guillen, Bryan E. Welm, Carlo C. Maley, Avi Schroeder, Joshua D. Schiffman
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 2153.
https://doi.org/10.1158/1538-7445.AM2017-2153
Published: 01 July 2017
View articletitled, Abstract 2153: Elephant p53 (EP53) expression induces apoptosis of human cancer cells
Journal Articles

Genomic Instability in Cancer: Teetering on the Limit of Tolerance

Free
Noemi Andor, Carlo C. Maley, Hanlee P. Ji
Journal: Cancer Research
Series: Author Choice
Cancer Res (2017) 77 (9): 2179–2185.
https://doi.org/10.1158/0008-5472.CAN-16-1553
Published: 30 April 2017
View articletitled, Genomic Instability in Cancer: Teetering on the Limit of Tolerance
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Journal Articles

Abstract 2387: Pan-cancer analysis of clonal evolution reveals the costs and adaptive benefits of genomic instability

Free
Noemi Andor, Trevor A. Graham, Marnix Jansen, Li C. Xia, Athena Aktipis, Claudia Petritsch, Hanlee P. Ji, Carlo C. Maley
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 2387.
https://doi.org/10.1158/1538-7445.AM2016-2387
Published: 15 July 2016
View articletitled, Abstract 2387: Pan-cancer analysis of clonal evolution reveals the costs and adaptive benefits of genomic instability
Journal Articles

Abstract 3686: Elephant TP53 (ep53) retrogene protein expression enhances cellular apoptosis in response to DNA damage

Free
Lisa M. Abegglen, Rosann Robinson, Lauren Donovan, Aleah F. Caulin, Mor Goldfeder, Avi Schroeder, Carlo C. Maley, Joshua D. Schiffman
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 3686.
https://doi.org/10.1158/1538-7445.AM2016-3686
Published: 15 July 2016
View articletitled, Abstract 3686: Elephant TP53 (ep53) retrogene protein expression enhances cellular apoptosis in response to DNA damage
Journal Articles

Abstract PR03: Pan-cancer analysis of the etiology and consequences of intra-tumor heterogeneity

Free
Noemi Andor, Trevor A. Graham, Claudia Petritsch, Hanlee P. Ji*, Carlo C. Maley*
Journal: Cancer Research
Cancer Res (2015) 75 (22_Supplement_1): PR03.
https://doi.org/10.1158/1538-7445.TRANSCAGEN-PR03
Published: 15 November 2015
View articletitled, Abstract PR03: Pan-cancer analysis of the etiology and consequences of intra-tumor heterogeneity
Journal Articles

Abstract A1-54: Pan-cancer analysis of the etiology and consequences of intratumor heterogeneity

Free
Noemi Andor, Trevor A. Graham, Claudia Petritsch, Hanlee P. Ji*, Carlo C. Maley*
Journal: Cancer Research
Cancer Res (2015) 75 (22_Supplement_1): A1-54.
https://doi.org/10.1158/1538-7445.TRANSCAGEN-A1-54
Published: 15 November 2015
View articletitled, Abstract A1-54: Pan-cancer analysis of the etiology and consequences of intratumor heterogeneity