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Journal Articles

Colorectal Tumors in Diverse Patient Populations Feature a Spectrum of Somatic Mutational Profiles

Cancer Res (2025) 85 (10): 1928–1944.

https://doi.org/10.1158/0008-5472.CAN-24-0747

Published: 15 May 2025

View articletitled, Colorectal Tumors in Diverse Patient Populations Feature a Spectrum of Somatic Mutational Profiles

Includes: Supplementary data

Journal Articles

Abstract 7377: Intrauterine device use and ovarian cancer risk among 11 case-control studies and 7 prospective cohort studies

Cancer Res (2025) 85 (8_Supplement_1): 7377.

https://doi.org/10.1158/1538-7445.AM2025-7377

Published: 21 April 2025

View articletitled, Abstract 7377: Intrauterine device use and ovarian cancer risk among 11 case-control studies and 7 prospective cohort studies

Journal Articles

spatialGE Is a User-Friendly Web Application That Facilitates Spatial Transcriptomics Data Analysis

Oscar E. Ospina, Roberto Manjarres-Betancur, Guillermo Gonzalez-Calderon, Alex C. Soupir, Inna Smalley, Kenneth Y. Tsai, Joseph Markowitz, Mariam L. Khaled, Ethan Vallebuona, Anders E. Berglund, Steven A. Eschrich, Xiaoqing Yu, Brooke L. Fridley

Cancer Res (2025) 85 (5): 848–858.

https://doi.org/10.1158/0008-5472.CAN-24-2346

Published: 03 March 2025

View articletitled, spatialGE Is a User-Friendly Web Application That Facilitates Spatial Transcriptomics Data Analysis

Includes: Supplementary data

Journal Articles

Abstract 876: spatialGE: Empowering researchers to study the tumor microenvironment leveraging spatial transcriptomics

Oscar Ospina, Roberto Manjarres-Betancur, Guillermo Gonzalez-Calderon, Alex C. Soupir, Inna Smalley, Kenneth Tsai, Joseph Markowitz, Anders Berglund, Xiaoqing Yu, Brooke L. Fridley

Cancer Res (2024) 84 (6_Supplement): 876.

https://doi.org/10.1158/1538-7445.AM2024-876

Published: 22 March 2024

View articletitled, Abstract 876: spatialGE: Empowering researchers to study the tumor microenvironment leveraging spatial transcriptomics

Journal Articles

Abstract 3562: Comparison of spatial co-localization measures for studying the tumor immune microenvironment with application to ovarian cancer

Brooke L. Fridley, Alex Soupir, Julia Wrobel, Christelle Colin-Leitzinger, Mary K. Townsend, Andrew B. Lawson, Kathryn L. Terry, Joellen M. Schildkraut, Shelley S. Tworoger, Lauren C. Peres

Cancer Res (2024) 84 (6_Supplement): 3562.

https://doi.org/10.1158/1538-7445.AM2024-3562

Published: 22 March 2024

View articletitled, Abstract 3562: Comparison of spatial co-localization measures for studying the tumor immune microenvironment with application to ovarian cancer

Journal Articles

Abstract 3928: Genomic landscape and estimation of immune infiltration of soft tissue sarcoma histology subtypes from the ORIEN network

Cancer Res (2024) 84 (6_Supplement): 3928.

https://doi.org/10.1158/1538-7445.AM2024-3928

Published: 22 March 2024

View articletitled, Abstract 3928: Genomic landscape and estimation of immune infiltration of soft tissue sarcoma histology subtypes from the ORIEN network

Journal Articles

Abstract 1163: Increased spatial coupling of integrin and collagen IV in the immunoresistant clear cell renal cell carcinoma tumor microenvironment

Cancer Res (2024) 84 (6_Supplement): 1163.

https://doi.org/10.1158/1538-7445.AM2024-1163

Published: 22 March 2024

View articletitled, Abstract 1163: Increased spatial coupling of integrin and collagen IV in the immunoresistant clear cell renal cell carcinoma tumor microenvironment

Journal Articles

Abstract A089: Influence of pre-diagnosis aspirin use on epithelial ovarian cancer tumor immune microenvironment markers: results from the Nurses’ Health Study (NHS) and NHSII

Nicola S. Meagher, Cassandra Hathaway, Mary K. Townsend, Mollie E. Barnard, Jose R. Conejo-Garcia, Brooke L. Fridley, Daryoush Saeed-Vafa, Britton Trabert, Shelley S. Tworoger, Melissa A. Merritt

Cancer Res (2024) 84 (5_Supplement_2): A089.

https://doi.org/10.1158/1538-7445.OVARIAN23-A089

Published: 04 March 2024

View articletitled, Abstract A089: Influence of pre-diagnosis aspirin use on epithelial ovarian cancer tumor immune microenvironment markers: results from the Nurses’ Health Study (NHS) and NHSII

Journal Articles

Abstract 3008: Association between distress and the tumor immune microenvironment in women with ovarian cancer

Cassandra A. Hathaway, Mary K. Townsend, Jose R. Conejo-Garcia, Brooke L. Fridley, Carlos Moran Segura, Jonathan V. Nguyen, Naoko Sasamoto, Daryoush Saeed-Vafa, Kathryn L. Terry, Laura D. Kubzansky, Shelley S. Tworoger

Cancer Res (2023) 83 (7_Supplement): 3008.

https://doi.org/10.1158/1538-7445.AM2023-3008

Published: 04 April 2023

View articletitled, Abstract 3008: Association between distress and the tumor immune microenvironment in women with ovarian cancer

Journal Articles

Abstract 2541: Immune cell clustering in ovarian cancer tumors and its association with survival

Alex C. Soupir, Christopher M. Wilson, Joellen M. Schildkraut, Lauren C. Peres, Brooke L. Fridley

Cancer Res (2022) 82 (12_Supplement): 2541.

https://doi.org/10.1158/1538-7445.AM2022-2541

Published: 15 June 2022

View articletitled, Abstract 2541: Immune cell clustering in ovarian cancer tumors and its association with survival

Journal Articles

Abstract 2522: Pathway and immune profile analysis of cyst-derived versus PanIN-derived pancreatic ductal adenocarcinomas

Cancer Res (2022) 82 (12_Supplement): 2522.

https://doi.org/10.1158/1538-7445.AM2022-2522

Published: 15 June 2022

View articletitled, Abstract 2522: Pathway and immune profile analysis of cyst-derived versus PanIN-derived pancreatic ductal adenocarcinomas

Journal Articles

Abstract 5887: Association of ovarian tumor immune profiles with overall survival

Shelley S. Tworoger, Mary K. Townsend, Jose Conejo-Garcia, Brooke L. Fridley, Carlos Moran Segura, Daryoush Saeed-Vafa, Naoko Sasamoto, Kathryn L. Terry

Cancer Res (2022) 82 (12_Supplement): 5887.

https://doi.org/10.1158/1538-7445.AM2022-5887

Published: 15 June 2022

View articletitled, Abstract 5887: Association of ovarian tumor immune profiles with overall survival

Journal Articles

Abstract 1192: Genetic ancestry and somatic mutational frequencies in colorectal cancer: Findings from the Latino Colorectal Cancer Consortium

Marco Matejcic, Jamie K. Teer, Hannah J. Hoehn, Zhihua Chen, Diana B. Diaz, Nathalie Nguyen, Douglas Cress, Estrella Carballido, Jason Fleming, Domenico Coppola, Mariana C. Stern, Brooke L. Fridley, Jane C. Figueiredo, Stephanie L. Schmit

Cancer Res (2020) 80 (16_Supplement): 1192.

https://doi.org/10.1158/1538-7445.AM2020-1192

Published: 15 August 2020

View articletitled, Abstract 1192: Genetic ancestry and somatic mutational frequencies in colorectal cancer: Findings from the Latino Colorectal Cancer Consortium

Journal Articles

Abstract 34: Predictors of discordance between image-based and manual scoring of immunohistochemical stains in ovarian cancer tissue microarrays

Naoko Sasamoto, Mary Townsend, Farnoosh Abbas-Aghababazadeh, Kathryn L. Terry, Joseph O. Johnson, Jonathan L. Hecht, Brooke L. Fridley, Shelley S. Tworoger

Cancer Res (2020) 80 (16_Supplement): 34.

https://doi.org/10.1158/1538-7445.AM2020-34

Published: 15 August 2020

View articletitled, Abstract 34: Predictors of discordance between image-based and manual scoring of immunohistochemical stains in ovarian cancer tissue microarrays

Journal Articles

Abstract 2420: Integrative analyses of gene expression, DNA methylation, genotype and copy number alterations characterize X-chromosome inactivation in ovarian cancer

Stacey J. Winham, Nicholas B. Larson, Sebastian M. Armasu, Zachary C. Fogarty, Melissa C. Larson, Kimberly R. Kalli, Kate Lawrenson, Simon Gayther, Brooke L. Fridley, Ellen L. Goode

Cancer Res (2017) 77 (13_Supplement): 2420.

https://doi.org/10.1158/1538-7445.AM2017-2420

Published: 01 July 2017

View articletitled, Abstract 2420: Integrative analyses of gene expression, DNA methylation, genotype and copy number alterations characterize X-chromosome inactivation in ovarian cancer

Journal Articles

Abstract 1833: Transcriptome characterization of high grade serous and endometrioid epithelial ovarian cancer tumors

Brooke L. Fridley, Junqiang Dai, Rama Raghavan, Chen Wang, Pengcheng Lu, Stacey Winham, Madalene Earp, Kate Lawrenson, Simon A. Gayther, Kimberly R. Kalli, Ellen L. Goode

Cancer Res (2016) 76 (14_Supplement): 1833.

https://doi.org/10.1158/1538-7445.AM2016-1833

Published: 15 July 2016

View articletitled, Abstract 1833: Transcriptome characterization of high grade serous and endometrioid epithelial ovarian cancer tumors

Journal Articles

Abstract 4636: Investigation of exome variants associated with overall survival in ovarian cancer

Stacey J. Winham, Brooke L. Fridley, Melissa C. Larson, Zachary Fogarty, Andrew Berchuck, Yian Ann Chen, Hui-Yi Lin, Georgia Chenevix-Trench, Jenny Permuth-Wey, Thomas A. Sellers, Ailith Pirie, Ellen L. Goode, Ovarian Cancer Association Consortium

Cancer Res (2015) 75 (15_Supplement): 4636.

https://doi.org/10.1158/1538-7445.AM2015-4636

Published: 01 August 2015

View articletitled, Abstract 4636: Investigation of exome variants associated with overall survival in ovarian cancer

Journal Articles

Abstract 4853: A bioinformatics approach to drug discovery: patient based connectivity mapping

Brooke L. Fridley, Rama Raghavan, Gottfried E. Konecny, Chen Wang, Ellen L. Goode, Harsh B. Pathak, Stephen Hyter

Cancer Res (2015) 75 (15_Supplement): 4853.

https://doi.org/10.1158/1538-7445.AM2015-4853

Published: 01 August 2015

View articletitled, Abstract 4853: A bioinformatics approach to drug discovery: patient based connectivity mapping

Journal Articles

Abstract 5495: Identification of markers predictive of phosphoramide mustard (PM) cellular sensitivity in lymphoblast cell lines

Lata Chauhan, Brooke L. Fridley, Alice Wang, Jatinder Kaur Lamba

Cancer Res (2015) 75 (15_Supplement): 5495.

https://doi.org/10.1158/1538-7445.AM2015-5495

Published: 01 August 2015

View articletitled, Abstract 5495: Identification of markers predictive of phosphoramide mustard (PM) cellular sensitivity in lymphoblast cell lines

Journal Articles

Abstract 5565: In vitro pharmacogenomic study of ovarian cancer finds novel genetic variants associated with response to platinum and taxane therapies

Brooke L. Fridley, Taraswi M. Ghosh, Alice Wang, Ellen L. Goode, Jatinder Lamba

Cancer Res (2014) 74 (19_Supplement): 5565.

https://doi.org/10.1158/1538-7445.AM2014-5565

Published: 01 October 2014

View articletitled, Abstract 5565: In vitro pharmacogenomic study of ovarian cancer finds novel genetic variants associated with response to platinum and taxane therapies

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Colorectal Tumors in Diverse Patient Populations Feature a Spectrum of Somatic Mutational Profiles

Abstract 7377: Intrauterine device use and ovarian cancer risk among 11 case-control studies and 7 prospective cohort studies

spatialGE Is a User-Friendly Web Application That Facilitates Spatial Transcriptomics Data Analysis

Abstract 876: spatialGE: Empowering researchers to study the tumor microenvironment leveraging spatial transcriptomics

Abstract 3562: Comparison of spatial co-localization measures for studying the tumor immune microenvironment with application to ovarian cancer

Abstract 3928: Genomic landscape and estimation of immune infiltration of soft tissue sarcoma histology subtypes from the ORIEN network

Abstract 1163: Increased spatial coupling of integrin and collagen IV in the immunoresistant clear cell renal cell carcinoma tumor microenvironment

Abstract A089: Influence of pre-diagnosis aspirin use on epithelial ovarian cancer tumor immune microenvironment markers: results from the Nurses’ Health Study (NHS) and NHSII

Abstract 3008: Association between distress and the tumor immune microenvironment in women with ovarian cancer

Abstract 2541: Immune cell clustering in ovarian cancer tumors and its association with survival

Abstract 2522: Pathway and immune profile analysis of cyst-derived versus PanIN-derived pancreatic ductal adenocarcinomas

Abstract 5887: Association of ovarian tumor immune profiles with overall survival

Abstract 1192: Genetic ancestry and somatic mutational frequencies in colorectal cancer: Findings from the Latino Colorectal Cancer Consortium

Abstract 34: Predictors of discordance between image-based and manual scoring of immunohistochemical stains in ovarian cancer tissue microarrays

Abstract 2420: Integrative analyses of gene expression, DNA methylation, genotype and copy number alterations characterize X-chromosome inactivation in ovarian cancer

Abstract 1833: Transcriptome characterization of high grade serous and endometrioid epithelial ovarian cancer tumors

Abstract 4636: Investigation of exome variants associated with overall survival in ovarian cancer

Abstract 4853: A bioinformatics approach to drug discovery: patient based connectivity mapping

Abstract 5495: Identification of markers predictive of phosphoramide mustard (PM) cellular sensitivity in lymphoblast cell lines

Abstract 5565: In vitro pharmacogenomic study of ovarian cancer finds novel genetic variants associated with response to platinum and taxane therapies

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