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Bradley M. Broom
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Journal Articles

A Galaxy Implementation of Next-Generation Clustered Heatmaps for Interactive Exploration of Molecular Profiling Data

Bradley M. Broom, Michael C. Ryan, Robert E. Brown, Futa Ikeda, Mark Stucky, David W. Kane, James Melott, Chris Wakefield, Tod D. Casasent, Rehan Akbani, John N. Weinstein
Journal: Cancer Research
Cancer Res (2017) 77 (21): e23–e26.
https://doi.org/10.1158/0008-5472.CAN-17-0318
Published: 01 November 2017
View article titled, A Galaxy Implementation of Next-Generation Clustered Heatmaps for Interactive Exploration of Molecular Profiling Data
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Includes: Multimedia, Supplementary data
Journal Articles

NSD1 Inactivation and SETD2 Mutation Drive a Convergence toward Loss of Function of H3K36 Writers in Clear Cell Renal Cell Carcinomas

Xiaoping Su, Jianping Zhang, Roger Mouawad, Eva Compérat, Morgan Rouprêt, Frederick Allanic, Jérôme Parra, Marc-Olivier Bitker, Erika J. Thompson, Banumathy Gowrishankar, Jane Houldsworth, John N. Weinstein, Jorg Tost, Bradley M. Broom, David Khayat, Jean-Philippe Spano, Nizar M. Tannir, Gabriel G. Malouf
Journal: Cancer Research
Cancer Res (2017) 77 (18): 4835–4845.
https://doi.org/10.1158/0008-5472.CAN-17-0143
Published: 14 September 2017
View article titled, <em>NSD1</em> Inactivation and <em>SETD2</em> Mutation Drive a Convergence toward Loss of Function of H3K36 Writers in Clear Cell Renal Cell Carcinomas
Open the PDF for <em>NSD1</em> Inactivation and <em>SETD2</em> Mutation Drive a Convergence toward Loss of Function of H3K36 Writers in Clear Cell Renal Cell Carcinomas in another window
Includes: Supplementary data
Journal Articles

Abstract 2979: A web portal of ‘next-generation’ clustered heat maps for user-friendly, interactive exploration of patterns in TCGA data

John N. Weinstein, Rehan Akbani, David W. Kane, James M. Melott, Tod D. Casasent, Rong Yao, Paul L. Roebuck, Gordon B. Mills, Michael C. Ryan, Christopher Wakefield, Bradley M. Broom
Journal: Cancer Research
Cancer Res (2015) 75 (15_Supplement): 2979.
https://doi.org/10.1158/1538-7445.AM2015-2979
Published: 01 August 2015
View article titled, Abstract 2979: A web portal of ‘next-generation’ clustered heat maps for user-friendly, interactive exploration of patterns in TCGA data
Journal Articles

Inhibition of mTORC1/2 Overcomes Resistance to MAPK Pathway Inhibitors Mediated by PGC1α and Oxidative Phosphorylation in Melanoma

Y.N. Vashisht Gopal, Helen Rizos, Guo Chen, Wanleng Deng, Dennie T. Frederick, Zachary A. Cooper, Richard A. Scolyer, Gulietta Pupo, Kakajan Komurov, Vasudha Sehgal, Jiexin Zhang, Lalit Patel, Cristiano G. Pereira, Bradley M. Broom, Gordon B. Mills, Prahlad Ram, Paul D. Smith, Jennifer A. Wargo, Georgina V. Long, Michael A. Davies
Journal: Cancer Research
Cancer Res (2014) 74 (23): 7037–7047.
https://doi.org/10.1158/0008-5472.CAN-14-1392
Published: 30 November 2014
View article titled, Inhibition of mTORC1/2 Overcomes Resistance to MAPK Pathway Inhibitors Mediated by PGC1α and Oxidative Phosphorylation in Melanoma
Open the PDF for Inhibition of mTORC1/2 Overcomes Resistance to MAPK Pathway Inhibitors Mediated by PGC1α and Oxidative Phosphorylation in Melanoma in another window
Includes: Supplementary data
Journal Articles

Abstract 5132: Interactively exploring patterns in TCGA data: a web-based compendium of ‘next-generation’ clustered heat maps.

John N. Weinstein, David W. Kane, Rehan Akbani, Deepti Dodda, Lam Nguyen, Michael C. Ryan, Chris Wakefield, Bradley M. Broom
Journal: Cancer Research
Cancer Res (2013) 73 (8_Supplement): 5132.
https://doi.org/10.1158/1538-7445.AM2013-5132
Published: 15 April 2013
View article titled, Abstract 5132: Interactively exploring patterns in TCGA data: a web-based compendium of ‘next-generation’ clustered heat maps.