1-8 of 8
Bahman Afsari
Close
Save search
Follow your search
Access your saved searches in your account
Would you like to receive an alert when new items match your search?
Close Modal
Sort by
Journal Articles

Newly Identified Members of FGFR1 Splice Variants Engage in Cross-talk with AXL/AKT Axis in Salivary Adenoid Cystic Carcinoma

Available to Purchase
Joseph O. Humtsoe, Hyun-Su Kim, Brandon Leonard, Shizhang Ling, Bhumsuk Keam, Luigi Marchionni, Bahman Afsari, Michael Considine, Alexander V. Favorov, Elana J. Fertig, Hyunseok Kang, Patrick K. Ha
Journal: Cancer Research
Cancer Res (2021) 81 (4): 1001–1013.
https://doi.org/10.1158/0008-5472.CAN-20-1780
Published: 15 February 2021
View articletitled, Newly Identified Members of FGFR1 Splice Variants Engage in Cross-talk with AXL/AKT Axis in Salivary Adenoid Cystic Carcinoma
Open the PDF for Newly Identified Members of FGFR1 Splice Variants Engage in Cross-talk with AXL/AKT Axis in Salivary Adenoid Cystic Carcinoma in another window
Includes: Supplementary data
Journal Articles

Differential Variation Analysis Enables Detection of Tumor Heterogeneity Using Single-Cell RNA-Sequencing Data

Free
Emily F. Davis-Marcisak, Thomas D. Sherman, Pranay Orugunta, Genevieve L. Stein-O'Brien, Sidharth V. Puram, Evanthia T. Roussos Torres, Alexander C. Hopkins, Elizabeth M. Jaffee, Alexander V. Favorov, Bahman Afsari, Loyal A. Goff, Elana J. Fertig
Journal: Cancer Research
Cancer Res (2019) 79 (19): 5102–5112.
https://doi.org/10.1158/0008-5472.CAN-18-3882
Published: 01 October 2019
View articletitled, Differential Variation Analysis Enables Detection of Tumor Heterogeneity Using Single-Cell RNA-Sequencing Data
Open the PDF for Differential Variation Analysis Enables Detection of Tumor Heterogeneity Using Single-Cell RNA-Sequencing Data in another window
Includes: Supplementary data
Journal Articles

Abstract 3399: Uncovering hidden sources of transcriptional dysregulation arising from inter- and intra-tumor heterogeneity

Free
Bahman Afsari, Leslie Cope, Daria A. Gaykalova, Donald Geman, Sidharth Puram, Loyal A. Goff, Alexander Favorov, Elana Judith Fertig
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 3399.
https://doi.org/10.1158/1538-7445.AM2019-3399
Published: 01 July 2019
View articletitled, Abstract 3399: Uncovering hidden sources of transcriptional dysregulation arising from inter- and intra-tumor heterogeneity
Journal Articles

Abstract 4697: Expression variation analysis for tumor heterogeneity in single-cell RNA-sequencing data

Free
Emily F. Davis-Marcisak, Pranay Orugunta, Genevieve Stein-O'Brien, Sidharth V. Puram, Evanthia Roussos Torres, Alexander Hopkins, Elizabeth M. Jaffee, Alexander V. Favorov, Bahman Afsari, Loyal A. Goff, Elana J. Fertig
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 4697.
https://doi.org/10.1158/1538-7445.AM2019-4697
Published: 01 July 2019
View articletitled, Abstract 4697: Expression variation analysis for tumor heterogeneity in single-cell RNA-sequencing data
Journal Articles

Integrated Analysis of Whole-Genome ChIP-Seq and RNA-Seq Data of Primary Head and Neck Tumor Samples Associates HPV Integration Sites with Open Chromatin Marks

Free
Dylan Z. Kelley, Emily L. Flam, Evgeny Izumchenko, Ludmila V. Danilova, Hildegard A. Wulf, Theresa Guo, Dzov A. Singman, Bahman Afsari, Alyza M. Skaist, Michael Considine, Jane A. Welch, Elena Stavrovskaya, Justin A. Bishop, William H. Westra, Zubair Khan, Wayne M. Koch, David Sidransky, Sarah J. Wheelan, Joseph A. Califano, Alexander V. Favorov, Elana J. Fertig, Daria A. Gaykalova
Journal: Cancer Research
Cancer Res (2017) 77 (23): 6538–6550.
https://doi.org/10.1158/0008-5472.CAN-17-0833
Published: 30 November 2017
View articletitled, Integrated Analysis of Whole-Genome ChIP-Seq and RNA-Seq Data of Primary Head and Neck Tumor Samples Associates HPV Integration Sites with Open Chromatin Marks
Open the PDF for Integrated Analysis of Whole-Genome ChIP-Seq and RNA-Seq Data of Primary Head and Neck Tumor Samples Associates HPV Integration Sites with Open Chromatin Marks in another window
Includes: Supplementary data
Journal Articles

A Novel Functional Splice Variant of AKT3 Defined by Analysis of Alternative Splice Expression in HPV-Positive Oropharyngeal Cancers

Free
Theresa Guo, Akihiro Sakai, Bahman Afsari, Michael Considine, Ludmila Danilova, Alexander V. Favorov, Srinivasan Yegnasubramanian, Dylan Z. Kelley, Emily Flam, Patrick K. Ha, Zubair Khan, Sarah J. Wheelan, J. Silvio Gutkind, Elana J. Fertig, Daria A. Gaykalova, Joseph Califano
Journal: Cancer Research
Cancer Res (2017) 77 (19): 5248–5258.
https://doi.org/10.1158/0008-5472.CAN-16-3106
Published: 01 October 2017
View articletitled, A Novel Functional Splice Variant of AKT3 Defined by Analysis of Alternative Splice Expression in HPV-Positive Oropharyngeal Cancers
Open the PDF for A Novel Functional Splice Variant of AKT3 Defined by Analysis of Alternative Splice Expression in HPV-Positive Oropharyngeal Cancers in another window
Includes: Supplementary data
Journal Articles

Abstract 3577: Splice expression variation analysis (SEVA) for differential gene isoform usage in cancer

Free
Bahman Afsari, Theresa Guo, Michael Considine, Dylan Kelley, Emily Flam, Liliana Florea, Patrick Ha, Donald Geman, Michael F. Ochs, Joseph A. Califano, Daria A. Gaykalova, Alexander V. Favorov, Elana J. Fertig
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 3577.
https://doi.org/10.1158/1538-7445.AM2017-3577
Published: 01 July 2017
View articletitled, Abstract 3577: Splice expression variation analysis (SEVA) for differential gene isoform usage in cancer
Journal Articles

Abstract 5342: Hardwiring mechanism into predicting cancer phenotypes by computational learning

Free
Bahman Afsari, Elana Judith Fertig, Laurent Younes, Donald Geman, Luigi Marchionni
Journal: Cancer Research
Cancer Res (2014) 74 (19_Supplement): 5342.
https://doi.org/10.1158/1538-7445.AM2014-5342
Published: 01 October 2014
View articletitled, Abstract 5342: Hardwiring mechanism into predicting cancer phenotypes by computational learning