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Journal Articles

Abstract LB119: Precision combination therapies based on recurrent oncogenic co-alterations

Anil Korkut, Xubin Li, Elizabeth Kong, Gonghong Yan, Zeynep Dereli, Behnaz Bozorgui, Parisa Imanirad, Jacob Elnaggar, Augustin Luna, David Menter, Patrick Pilié, Timothy Yap, Scott Kopetz, Chris Sander
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): LB119.
DOI: https://doi.org/10.1158/1538-7445.AM2022-LB119
Published: 15 June 2022
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Journal Articles

Abstract 1002: Targeting adaptation to cancer treatment by drug combinations

Heping Wang, Augustin Luna, Gonghong Yan, Xubin Li, Ozgun Babur, Chris Sander, Gordon Mills
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 1002.
DOI: https://doi.org/10.1158/1538-7445.AM2022-1002
Published: 15 June 2022
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Journal Articles

Abstract 203: SCLC-CellMiner: An extensive cell line genomic and pharmacology resource identifies a subgroup of small cell lung cancers sensitive to targeted therapies and immunotherapies

Camille Tlemsani, Lorinc Pongor, Fathi Elloumi, Luc Girard, Kenneth Huffman, Nitin Roper, Sudhir Varma, Augustin Luna, Vinodh Rajapakse, Pascaline Boudou-Rouquette, Robin Sebastian, Kurt Kohn, Julia Krushkal, Mirit Aladjem, Beverly Teicher, Paul Meltzer, William Reinhold, John Minna, Anish Thomas, Yves Pommier
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 203.
DOI: https://doi.org/10.1158/1538-7445.AM2021-203
Published: 01 July 2021
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Journal Articles

Abstract 212: Sarcoma-CellMiner: An extensive resource for patient-derived sarcoma cell line epigenetics, genomics and pharmacology

Camille Tlemsani, Lorinc Pongor, Javed Khan, Fathi Elloumi, Sudhir Varma, Augustin Luna, Vinodh Rajapakse, Kurt Kohn, Julia Krushkal, Mirit Aladjem, Beverly Teicher, Paul Meltzer, William Reinhold, Christine Heske, Yves Pommier
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 212.
DOI: https://doi.org/10.1158/1538-7445.AM2021-212
Published: 01 July 2021
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Journal Articles

Abstract 2102: Interpretable machine learning for perturbation biology

Judy Shen, Bo Yuan, Augustin Luna, Anil Korkut, Debora Marks, John Ingraham, Chris Sander
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 2102.
DOI: https://doi.org/10.1158/1538-7445.AM2020-2102
Published: 15 August 2020
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Journal Articles

Abstract 3451: Interpreting gene lists from -omics experiments

Augustin Luna, Jeffrey V. Wong, Emek Demir, Igor Rodchenkov, Özgün Babur, Chris Sander, Gary D. Bader
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 3451.
DOI: https://doi.org/10.1158/1538-7445.AM2019-3451
Published: 01 July 2019
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Journal Articles

Abstract 3820: Discovery of adaptive resistance pathways and anti-resistance combination therapies from phosphoproteomic data using graphical models

Augustin Luna, Heping Wang, Ozgun Babur, Chris Sander, Anil Korkut
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 3820.
DOI: https://doi.org/10.1158/1538-7445.AM2019-3820
Published: 01 July 2019
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Journal Articles

Abstract 1284: How can you interpret gene lists from -omics experiments

Jeffrey V. Wong, Augustin Luna, Emek Demir, Igor Rodchenkov, Özgün Babur, Chris Sander, Gary D. Bader
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 1284.
DOI: https://doi.org/10.1158/1538-7445.AM2018-1284
Published: 01 July 2018
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Journal Articles

Abstract 2838: Discovery of adaptive resistance pathways and anti-resistance combination therapies in cancer from phosphoproteomic data

Augustin Luna, Özgün Babur, Gonghong Yan, Emek Demir, Chris Sander, Anil Korkut
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 2838.
DOI: https://doi.org/10.1158/1538-7445.AM2018-2838
Published: 01 July 2018
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Journal Articles

Abstract 3302: The molecular landscape of oncogenic signaling pathways in The Cancer Genome Atlas

Francisco Sanchez-Vega, Marco Mina, Joshua Armenia, Walid K. Chatila, Augustin Luna, Konnor La, Sofia Dimitriadoy, David L. Liu, Havish S. Kantheti, Zachary Heins, Angelica Ochoa, Benjamin Gross, Jianjiong Gao, Hongxin Zhang, Ritika Kundra, Cyriac Kandoth, Istemi Bahceci, Leonard Dervishi, Ugur Dogrusoz, Wanding Zhou, Hui Shen, Peter W. Laird, Alice H. Berger, Trever G. Bivona, Alexander J. Lazar, Gary Hammer, Thomas Giordano, Lawrence Kwong, Grant McArthur, Chenfei Huang, Mitchell J. Frederick, Frank McCormick, Matthew Meyerson, The Cancer Genome Atlas Research Network, Eliezer Van Allen, Andrew D. Cherniack, Giovanni Ciriello, Chris Sander, Nikolaus Schultz
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 3302.
DOI: https://doi.org/10.1158/1538-7445.AM2018-3302
Published: 01 July 2018
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Journal Articles

Abstract 2586: CellMinerCDB: Enabling cross-database exploration of molecular pharmacology data and response determinant discovery in cancer cell lines

Vinodh N. Rajapakse, Augustin Luna, Chris Sander, William C. Reinhold, Yves Pommier
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 2586.
DOI: https://doi.org/10.1158/1538-7445.AM2017-2586
Published: 01 July 2017
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Journal Articles

The NCI-60 Methylome and Its Integration into CellMiner

William C. Reinhold, Sudhir Varma, Margot Sunshine, Vinodh Rajapakse, Augustin Luna, Kurt W. Kohn, Holly Stevenson, Yonghong Wang, Holger Heyn, Vanesa Nogales, Sebastian Moran, David J. Goldstein, James H. Doroshow, Paul S. Meltzer, Manel Esteller, Yves Pommier
Journal: Cancer Research
Cancer Res (2017) 77 (3): 601–612.
DOI: https://doi.org/10.1158/0008-5472.CAN-16-0655
Published: 31 January 2017
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Includes: Supplementary data