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Andrew D. Cherniack
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Journal Articles

Abstract 3890: Sequencing of 888 pediatric solid tumors informs precision oncology trial design and data sharing initiatives in pediatric cancer

Suzanne J. Forrest, Hersh Gupta, Abigail Ward, Yvonne Li, Duong Doan, Alyaa Al-Ibraheemi, Sanda Alexandrescu, Pratiti Bandopadhayay, Suzanne Shusterman, Elizabeth A. Mullen, Natalie Collins, Susan N. Chi, Karen D. Wright, Priti Kumari, Tali Mazor, Keith L. Ligon, Priyanka Shivdasani, Phani Davineni, Monica Manam, Richard L. Schilsky, Suanna S. Bruinooge, Jaime M. Guidry Auvil, Ethan Cerami, Barrett J. Rollins, Matthew L. Meyerson, Neal I. Lindeman, Laura MacConaill, Bruce E. Johnson, Andrew D. Cherniack, Alanna J. Church, Katherine A. Janeway
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 3890.
DOI: https://doi.org/10.1158/1538-7445.AM2022-3890
Published: 15 June 2022
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Journal Articles

Abstract 867: Velcrin-induced cleavage of tRNA-Leu-TAA by SLFN12 RNase causes cancer cell death

Sooncheol Lee, Stephanie Hoyt, Xiaoyun Wu, Colin Garvie, Joseph McGaunn, Andrew D. Cherniack, Matthew Meyerson, Heidi Greulich
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 867.
DOI: https://doi.org/10.1158/1538-7445.AM2022-867
Published: 15 June 2022
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Journal Articles

Abstract NG01: Synthetic lethal interaction between the ESCRT paralog enzymes VPS4A and VPS4B in cancers harboring loss of chromosome 18q or 16q

Jasper E. Neggers, Brenton Paolella, Adhana Asfaw, Michael V. Rothberg, Tom A. Skipper, Radha Kalekar, Michael Burger, Neekesh Dharia, Guillaume Kugener, Jeremie Kalfon, Nancy Dumont, Yvonne Li, Liam Spurr, Annan Yang, Wenbo Wu, AndrewAdam Durbin, Brian M. Wolpin, David E. Root, Jesse Boehm, Andrew D. Cherniack, Aviad Tsherniak, Andrew L. Hong, William C. Hahn, Kimberly Stegmaier, Todd Golub, Francisca Vazquez, Andrew J. Aguirre
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): NG01.
DOI: https://doi.org/10.1158/1538-7445.AM2021-NG01
Published: 01 July 2021
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Journal Articles

Abstract 2135: Functional models of chromosome arm aneuploidies in lung squamous cell carcinoma

Alison Marie Taylor, Sejal Jain, Juliann Shih, Andrew D. Cherniack, Rameen Beroukhim, Matthew Meyerson
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 2135.
DOI: https://doi.org/10.1158/1538-7445.AM2021-2135
Published: 01 July 2021
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Journal Articles

Abstract PO-011: Synthetic lethal interaction between the ESCRT paralog enzymes VPS4A and VPS4B in SMAD4 or CDH1-deleted cancers

Jasper E. Neggers, Brenton R. Paolella, Adhana Asfaw, Michael V. Rothberg, Thomas A. Skipper, Radha L. Kalekar, Michael J. Krill-Burger, Neekesh V. Dharia, Guillaume Kugener, Adam D. Durbin, Annan Yang, Nancy Dumont, Yvonne Y. Li, Brian M. Wolpin, Federica Piccioni, David E. Root, Jesse S. Boehm, Andrew D. Cherniack, Aviad Tsherniak, Andrew L. Hong, William C. Hahn, Kimberly Stegmaier, Todd R. Golub, Francisca Vazquez, Andrew J. Aguirre
Journal: Cancer Research
Cancer Res (2020) 80 (22_Supplement): PO-011.
DOI: https://doi.org/10.1158/1538-7445.PANCA20-PO-011
Published: 13 November 2020
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Journal Articles

Abstract 1097: FGFR2 in-frame indels: A novel targetable alteration in intrahepatic cholangiocarcinoma

Yvonne Y. Li, James M. Cleary, Srivatsan Raghavan, Liam F. Spurr, Qibiao Wu, Lei Shi, Lauren K. Brais, Maureen Loftus, Lipika Goyal, Anuj K. Patel, Atul B. Shinagare, Thomas E. Clancy, Geoffrey Shapiro, Ethan Cerami, William R. Sellers, William C. Hahn, Matthew Meyerson, Nabeel Bardeesy, Andrew D. Cherniack, Brian M. Wolpin
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 1097.
DOI: https://doi.org/10.1158/1538-7445.AM2020-1097
Published: 15 August 2020
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Journal Articles

Abstract LB-053: VPS4A is a synthetic lethal target in VPS4B-deficient cancers due to co-deletion with SMAD4

Jasper E. Neggers, Brenton R. Paolella, Adhana Asfaw, Michael V. Rothberg, Thomas A. Skipper, Radha L. Kalekar, John M. Krill-Burger, Andrew L. Hong, Guillaume Kugener, Jeremie Kalfon, Annan Yang, Chen Yuan, Nancy Dumont, Alfredo Gonzalez, Mai Abdusamad, Yvonne Y. Li, Liam F. Spurr, Westley W. Wu, Federica Piccioni, Brian M. Wolpin, David E. Root, Jesse S. Boehm, Andrew D. Cherniack, Aviad Tsherniak, Todd R. Golub, Francisca Vazquez, Andrew J. Aguirre
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): LB-053.
DOI: https://doi.org/10.1158/1538-7445.AM2020-LB-053
Published: 15 August 2020
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Journal Articles

Abstract 5668: Genomic correlates of PD-L1 expression are associated with response to immunotherapy in non-small cell lung cancer

Liam F. Spurr, Giuseppe Lamberti, Yvonne Y. Li, Biagio Ricciuti, Gonzalo Recondo, Renato Umeton, Lynette M. Sholl, Matthew L. Meyerson, Andrew D. Cherniack, Mark M. Awad
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 5668.
DOI: https://doi.org/10.1158/1538-7445.AM2020-5668
Published: 15 August 2020
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Journal Articles

Abstract A44: Functional models of chromosome arm-level aneuploidies in cancer

Alison M. Taylor, Sejal Jain, Juliann Shih, Andrew D. Cherniack, Rameen Beroukhim, Matthew Meyerson
Journal: Cancer Research
Cancer Res (2020) 80 (11_Supplement): A44.
DOI: https://doi.org/10.1158/1538-7445.CAMODELS2020-A44
Published: 02 June 2020
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Journal Articles

Abstract 3413: A pan-cancer atlas of genomic, epigenomic and transcriptomic alterations in the TGF-β pathway

Anil Korkut, Sobia Zaidi, Rupa Kanchi, Ashton C. Berger, Gordon Robertson, Lawrence N. Kwong, Mike Datto, Jason Roszik, Shiyun Ling, Andre Schultz, Visweswaran Ravikumar, Ganiraju Manyam, Arvind Rao, Simon Shelley, Yuexin Liu, Zhenlin Ju, Donna Hansel, Guillermo de Velasco, Arjun Pennathur, Jesper B. Andersen, Colm J. O'Rourke, Kazufumi Ohshiro, Wilma Jogunoori, Nancy Gough, Shulin Li, Hatice Osmanbeyoglu, Andres Houseman, Shuyun Rao, Maciej Wiznerowicz, Jian Chen, Shoujun Gu, Wencai Ma, Jiexin Zhang, Pan Tong, Andrew D. Cherniack, Chuxia Deng, Linda Resar-Smith, Jaffer Ajani, The Cancer Genome Atlas Research Network, John N. Weinstein, Lopa Mishra, Rehan Akbani
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 3413.
DOI: https://doi.org/10.1158/1538-7445.AM2018-3413
Published: 01 July 2018
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Journal Articles

Abstract 3003: Loss of heterozygosity of essential genes represents a novel class of cancer vulnerabilities

Caitlin A. Nichols, Brenton R. Paolella, William J. Gibson, Meredith S. Brown, Laura M. Urbanski, Jack A. Kosmicki, John P. Busanovich, Ashton C. Berger, Galen F. Gao, Andrew D. Cherniack, Rameen Beroukhim
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 3003.
DOI: https://doi.org/10.1158/1538-7445.AM2018-3003
Published: 01 July 2018
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Journal Articles

Abstract 3002: Genome engineering approaches to generate models of chromosome arm-level cancer aneuploidy

Alison Marie Taylor, Xiaoyang Zhang, Juliann Shih, Gavin Ha, Galen F. Gao, Ashton C. Berger, Andrew D. Cherniack, Rameen Beroukhim, Matthew Meyerson
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 3002.
DOI: https://doi.org/10.1158/1538-7445.AM2018-3002
Published: 01 July 2018
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Journal Articles

Abstract 3302: The molecular landscape of oncogenic signaling pathways in The Cancer Genome Atlas

Francisco Sanchez-Vega, Marco Mina, Joshua Armenia, Walid K. Chatila, Augustin Luna, Konnor La, Sofia Dimitriadoy, David L. Liu, Havish S. Kantheti, Zachary Heins, Angelica Ochoa, Benjamin Gross, Jianjiong Gao, Hongxin Zhang, Ritika Kundra, Cyriac Kandoth, Istemi Bahceci, Leonard Dervishi, Ugur Dogrusoz, Wanding Zhou, Hui Shen, Peter W. Laird, Alice H. Berger, Trever G. Bivona, Alexander J. Lazar, Gary Hammer, Thomas Giordano, Lawrence Kwong, Grant McArthur, Chenfei Huang, Mitchell J. Frederick, Frank McCormick, Matthew Meyerson, The Cancer Genome Atlas Research Network, Eliezer Van Allen, Andrew D. Cherniack, Giovanni Ciriello, Chris Sander, Nikolaus Schultz
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 3302.
DOI: https://doi.org/10.1158/1538-7445.AM2018-3302
Published: 01 July 2018
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Journal Articles

Abstract 3287: An integrated TCGA pan-cancer clinical data resource to drive high quality survival outcome analytics

Jianfang Liu, Tara Lichtenberg, Katherine A. Hoadley, Laila M. Poisson, Alexander J. Lazar, Andrew D. Cherniack, Albert J. Kovatich, Christopher C. Benz, Douglas A. Levine, Adrian V. Lee, Larsson Omberg, Denise M. Wolf, Craig D. Shriver, Vesteinn Thorsson, The Cancer Genome Atlas Research Network, Hai Hu
Journal: Cancer Research
Cancer Res (2018) 78 (13_Supplement): 3287.
DOI: https://doi.org/10.1158/1538-7445.AM2018-3287
Published: 01 July 2018
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Journal Articles

Genomic Activation of PPARG Reveals a Candidate Therapeutic Axis in Bladder Cancer

Jonathan T. Goldstein, Ashton C. Berger, Juliann Shih, Fujiko F. Duke, Laura Furst, David J. Kwiatkowski, Andrew D. Cherniack, Matthew Meyerson, Craig A. Strathdee
Journal: Cancer Research
Cancer Res (2017) 77 (24): 6987–6998.
DOI: https://doi.org/10.1158/0008-5472.CAN-17-1701
Published: 14 December 2017
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Includes: Supplementary data
Journal Articles

Abstract 128: Comprehensive molecular characterization of 412 muscle-invasive urothelial bladder carcinomas: final analysis of The Cancer Genome Atlas (TCGA) project

John N. Weinstein, Seth P. Lerner, David J. Kwiatkowski, Gad Getz, Jaegil Kim, Hikmat A. Al-ahmadie, Andrew D. Cherniack, Guangwu Guo, Rehan Akbani, Katherine A. Hoadley, William Y. Kim, Gordon Robertson, Andrew J. Mungall, Toshinori Hinoue, Peter W. Laird, Jonathan E. Rosenberg, Joaquim Bellmunt, Dean F. Bajorin, Margaret B. Morgan, Chad J. Creighton, Dmitry Gordenin, Joshua M. Stuart, Xiaoping Su, Michael C. Ryan, Jeffrey S. Damrauer, Wei Zhang, Yuexin Liu, Yiling Lu, Nikolaus Schultz, Raju Kucherlapati, Gordon B. Mills, Donna E. Hansel, Brian D. Robinson, Bodgen A. Czerniak, Victor E. Reuter
Journal: Cancer Research
Cancer Res (2016) 76 (14_Supplement): 128.
DOI: https://doi.org/10.1158/1538-7445.AM2016-128
Published: 15 July 2016
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Journal Articles

Abstract 2976: Comprehensive Pan-Genomic characterization of adrenocortical carcinoma

Siyuan Zheng, Andrew D. Cherniack, Ninad Dewal, Richard A. Moffitt, Ludmila Danilova, Bradley A. Murray, Antonio M. Lerario, Tobias Else, Theo A. Knijnenburg, Giovanni Ciriello, Seungchan Kim, Guillaume Assie, Olena Morozova, Rehan Akbani, Juliann Shih, Katherine A. Hoadley, Toni K. Choueiri, Jens Waldmann, Ozgur Mete, Gordon A. Robertson, Matthew Meyerson, Michael J. Demeure, Felix Beuschlein, Anthony Gill, Ana C. Latronico, Maria C. Fragosa, Leslie Cope, Electron Kebebew, Mouhammed A. Habra, Timothy G. Whitsett, Kimberly J. Bussey, William E. Rainey, Sylvia Asa, Jérôme Bertherat, Martin Fassnacht, David A. Wheeler, The Cancer Genome Atlas Research Network, Gary D. Hammer, Thomas J. Giordano, Roel Verhaak
Journal: Cancer Research
Cancer Res (2015) 75 (15_Supplement): 2976.
DOI: https://doi.org/10.1158/1538-7445.AM2015-2976
Published: 01 August 2015
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Journal Articles

Abstract 4692: Relationships between somatic genomic alterations, tumor stage and progression-free survival in cervical cancer

Akinyemi I. Ojesina, Bradley Murray, Line Bjorge, Kathrine Woie, Camilla Krakstad, Lee Lichtenstein, Chandra Sekhar Pedamallu, Amaro Taylor-Weiner, Samuel S. Freeman, Andrew D. Cherniack, Michael S. Lawrence, Kristian Cibulskis, Scott L. Carter, Heather Walline, Thomas E. Carey, Olav K. Vintermyr, Bjorn Bertelsen, Christopher P. Crum, Gad Getz, Matthew Meyerson, Helga B. Salvesen
Journal: Cancer Research
Cancer Res (2014) 74 (19_Supplement): 4692.
DOI: https://doi.org/10.1158/1538-7445.AM2014-4692
Published: 01 October 2014
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Journal Articles

Glioblastoma-Derived Epidermal Growth Factor Receptor Carboxyl-Terminal Deletion Mutants Are Transforming and Are Sensitive to EGFR-Directed Therapies

Jeonghee Cho, Sandra Pastorino, Qing Zeng, Xiaoyin Xu, William Johnson, Scott Vandenberg, Roel Verhaak, Andrew D. Cherniack, Hideo Watanabe, Amit Dutt, Jihyun Kwon, Ying S. Chao, Robert C. Onofrio, Derek Chiang, Yuki Yuza, Santosh Kesari, Matthew Meyerson
Journal: Cancer Research
Cancer Res (2011) 71 (24): 7587–7596.
DOI: https://doi.org/10.1158/0008-5472.CAN-11-0821
Published: 15 December 2011
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Includes: Supplementary data
Journal Articles

Clotrimazole, an Inhibitor of Epidermal Benzo(a)pyrene Metabolism and DNA Binding and Carcinogenicity of the Hydrocarbon

Hasan Mukhtar, Benjamin J. Del Tito, Jr., Mukul Das, Evan P. Cherniack, Andrew D. Cherniack, David R. Bickers
Journal: Cancer Research
Cancer Res (1984) 44 (10): 4233–4240.
Published: 01 October 1984
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