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Anders E. Berglund
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Journal Articles

spatialGE Is a User-Friendly Web Application That Facilitates Spatial Transcriptomics Data Analysis

Oscar E. Ospina, Roberto Manjarres-Betancur, Guillermo Gonzalez-Calderon, Alex C. Soupir, Inna Smalley, Kenneth Y. Tsai, Joseph Markowitz, Mariam L. Khaled, Ethan Vallebuona, Anders E. Berglund, Steven A. Eschrich, Xiaoqing Yu, Brooke L. Fridley
Journal: Cancer Research
Cancer Res (2025) 85 (5): 848–858.
https://doi.org/10.1158/0008-5472.CAN-24-2346
Published: 03 March 2025
View article titled, spatialGE Is a User-Friendly Web Application That Facilitates Spatial Transcriptomics Data Analysis
Open the PDF for spatialGE Is a User-Friendly Web Application That Facilitates Spatial Transcriptomics Data Analysis in another window
Includes: Supplementary data
Journal Articles

Abstract 1163: Increased spatial coupling of integrin and collagen IV in the immunoresistant clear cell renal cell carcinoma tumor microenvironment

Alex C. Soupir, Mitchell T. Hayes, Taylor C. Peak, Oscar E. Ospina, Nicholas H. Chakiryan, Anders E. Berglund, Paul A. Stewart, Jonathan Nguyen, Carlos M. Moran-Segura, Natasha L. Francis, Paola M. Ramos-Echevarria, Jad Chahoud, Roger Li, Kenneth Y. Tsai, Jodi A. Balasi, Yamila Caraballo-Perez, Jasreman Dhillon, Lindsey A. Martinez, Warren E. Gloria, Nathan Schurman, Sean Kim, Mark Gregory, James J. Mule, Brooke L. Fridley, Brandon J. Manley
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 1163.
https://doi.org/10.1158/1538-7445.AM2024-1163
Published: 22 March 2024
View article titled, Abstract 1163: Increased spatial coupling of integrin and collagen IV in the immunoresistant clear cell renal cell carcinoma tumor microenvironment
Journal Articles

CK1δ and CK1ε Signaling Sustains Mitochondrial Metabolism and Cell Survival in Multiple Myeloma

Karen L. Burger, Mario R. Fernandez, Mark B. Meads, Praneeth Sudalagunta, Paula S. Oliveira, Rafael Renatino Canevarolo, Raghunandan Reddy Alugubelli, Alexandre Tungsevik, Gabe De Avila, Maria Silva, Allison I. Graeter, Hongyue A. Dai, Nicole D. Vincelette, Antony Prabhu, Dario Magaletti, Chunying Yang, Weimin Li, Amit Kulkarni, Oliver Hampton, John M. Koomen, William R. Roush, Andrii Monastyrskyi, Anders E. Berglund, Ariosto S. Silva, John L. Cleveland, Kenneth H. Shain
Journal: Cancer Research
Cancer Res (2023) 83 (23): 3901–3919.
https://doi.org/10.1158/0008-5472.CAN-22-2350
Published: 01 December 2023
View article titled, CK1δ and CK1ε Signaling Sustains Mitochondrial Metabolism and Cell Survival in Multiple Myeloma
Open the PDF for CK1δ and CK1ε Signaling Sustains Mitochondrial Metabolism and Cell Survival in Multiple Myeloma in another window
Includes: Supplementary data
Journal Articles

Abstract 3731: The polyamine-hypusine circuit controls an oncogenic translational program essential for malignant transformation in MYC-driven lymphoma

Shima Nakanishi, Jiannong Li, Anders E. Berglund, Youngchul Kim, Yonghong Zhang, Ling Zhang, Chunying Yang, Raghavendra G. Mirmira, John L. Cleveland
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 3731.
https://doi.org/10.1158/1538-7445.AM2023-3731
Published: 04 April 2023
View article titled, Abstract 3731: The polyamine-hypusine circuit controls an oncogenic translational program essential for malignant transformation in MYC-driven lymphoma
Journal Articles

Disrupting the MYC-TFEB Circuit Impairs Amino Acid Homeostasis and Provokes Metabolic Anergy

Mario R. Fernandez, Franz X. Schaub, Chunying Yang, Weimin Li, Seongseok Yun, Stephanie K. Schaub, Frank C. Dorsey, Min Liu, Meredith A. Steeves, Andrea Ballabio, Alexandar Tzankov, Zhihua Chen, John M. Koomen, Anders E. Berglund, John L. Cleveland
Journal: Cancer Research
Cancer Res (2022) 82 (7): 1234–1250.
https://doi.org/10.1158/0008-5472.CAN-21-1168
Published: 01 April 2022
View article titled, Disrupting the MYC-TFEB Circuit Impairs Amino Acid Homeostasis and Provokes Metabolic Anergy
Open the PDF for Disrupting the MYC-TFEB Circuit Impairs Amino Acid Homeostasis and Provokes Metabolic Anergy in another window
Includes: Supplementary data
Journal Articles

Abstract PO-090: TGF-β induced EMT gene expression is associated with promoter demethylation in pancreatic cancer

Manjul Rana, Abul Elahi, Abidemi O. Ajidahun, Rita G. Kansal, Anders E. Berglund, David Shibata, Evan S. Glazer
Journal: Cancer Research
Cancer Res (2021) 81 (22_Supplement): PO-090.
https://doi.org/10.1158/1538-7445.PANCA21-PO-090
Published: 15 November 2021
View article titled, Abstract PO-090: TGF-β induced EMT gene expression is associated with promoter demethylation in pancreatic cancer
Journal Articles

Abstract 1635: Sirt2 blockade promotes T cell metabolism and restores the anti-tumor immunity

Imene Hamaidi, Lin Zhang, Nayoung Kim, Min Hsuan Wang, Cristina Iclozan, Bin Fang, Min Liu, John M. Koomen, Anders E. Berglund, Sean J. Yoder, Jiqiang Yao, Robert W. Engelman, Ben C. Creelan, Jose R. Conejo-Garcia, James J. Mulé, Scott J. Antonia, Sungjune Kim
Journal: Cancer Research
Cancer Res (2021) 81 (13_Supplement): 1635.
https://doi.org/10.1158/1538-7445.AM2021-1635
Published: 01 July 2021
View article titled, Abstract 1635: Sirt2 blockade promotes T cell metabolism and restores the anti-tumor immunity
Journal Articles

Abstract 3520: Immunogenomic landscape of grade group 5 prostate cancer predicts risk of lethal outcomes and may inform treatment response

Kosj Yamoah, Shivanshu Awasthi, Brandon Mahal, Shuang G. Zhao, Julieta Abraham-Miranda, Travis A. Gerke, Elai Davicioni, Robert J. Rounbehler, Anders E. Berglund, Daniel G. Grass, Jong Y. Park, Julio M. Pow-Sang, Daniel Fernandez, Rohit K. Jain, Edward M. Schaeffer, Stephen Freedland, Daniel E. Spratt, Robert B. Den, Manish Kohli, Timothy R. Rebbeck, Felix Y. Fang
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 3520.
https://doi.org/10.1158/1538-7445.AM2020-3520
Published: 15 August 2020
View article titled, Abstract 3520: Immunogenomic landscape of grade group 5 prostate cancer predicts risk of lethal outcomes and may inform treatment response
Journal Articles

Abstract 4471: Commercial gene expression tests for prostate cancer prognosis provide paradoxical estimates of race-specific risk

Jordan H. Creed, Anders E. Berglund, Robert J. Rounbehler, Shivanshu Awasthi, John L. Cleveland, Jong Y. Park, Kosj Yamoah, Travis A. Gerke
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 4471.
https://doi.org/10.1158/1538-7445.AM2019-4471
Published: 01 July 2019
View article titled, Abstract 4471: Commercial gene expression tests for prostate cancer prognosis provide paradoxical estimates of race-specific risk
Journal Articles

Abstract A045: All happy families are alike: Transcriptomic homogeneity in indolent prostate tumors is a useful prognostic biomarker

Travis Gerke, Svitlana Tyekucheva, Jordan H. Creed, Kathryn L. Penney, Jennifer A. Sinnott, Ericka Ebot, Anders E. Berglund, Massimo Loda, Meir J. Stampfer, Peter Kraft, Giovanni Parmigiani, Lorelei A. Mucci
Journal: Cancer Research
Cancer Res (2018) 78 (16_Supplement): A045.
https://doi.org/10.1158/1538-7445.PRCA2017-A045
Published: 14 August 2018
View article titled, Abstract A045: All happy families are alike: Transcriptomic homogeneity in indolent prostate tumors is a useful prognostic biomarker
Journal Articles

Abstract 5716: Tristetraprolin is a prognostic biomarker for biochemical recurrence in low Gleason score patients

Anders E. Berglund, Travis Gerke, Shivanshu Awasthi, G. Daniel Grass, Hyun Y. Park, John L. Cleveland, Jong Y. Park, Kosj Yamoah, Robert J. Rounbehler
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 5716.
https://doi.org/10.1158/1538-7445.AM2017-5716
Published: 01 July 2017
View article titled, Abstract 5716: Tristetraprolin is a prognostic biomarker for biochemical recurrence in low Gleason score patients
Journal Articles

Abstract 206: Proteogenomic classifications and outcome in squamous cell carcinoma of the lung

Robbert J.C. Slebos, Paul A. Stewart, Eric A. Welsh, Ling Cen, Yonghong Zhang, Zhihua Chen, Chia-Ho Cheng, Fredrik Pettersson, Anders E. Berglund, Guolin Zhang, Bin Fang, Victoria Izumi, Sean J. Yoder, Katherine M. Fellows, Y Ann Chen, Jamie Teer, Steven Eschrich, John Koomen, Eric Haura
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 206.
https://doi.org/10.1158/1538-7445.AM2017-206
Published: 01 July 2017
View article titled, Abstract 206: Proteogenomic classifications and outcome in squamous cell carcinoma of the lung
Journal Articles

Abstract 914: Development of a prognostic and predictive E2F signature in formalin-fixed, paraffin-embedded early-stage non-small cell lung cancer samples

Courtney A. Kurtyka, Lu Chen, Matthew B. Schabath, Dung-Tsa Chen, William Brazelle, Eric A. Welsh, Anders E. Berglund, Steven A. Eschrich, Jhanelle E. Gray, Eric B. Haura, W. Douglas Cress
Journal: Cancer Research
Cancer Res (2014) 74 (19_Supplement): 914.
https://doi.org/10.1158/1538-7445.AM2014-914
Published: 01 October 2014
View article titled, Abstract 914: Development of a prognostic and predictive E2F signature in formalin-fixed, paraffin-embedded early-stage non-small cell lung cancer samples
Journal Articles

Abstract 2354: An E2F signature predicts benefit of adjuvant chemotherapy in early-stage non-small cell lung cancer.

Courtney A. Kurtyka, Dung-Tsa Chen, Lu Chen, William Brazelle, Eric A. Welsh, Anders E. Berglund, Steven A. Eschrich, Matthew B. Schabath, Eric B. Haura, W. Douglas Cress
Journal: Cancer Research
Cancer Res (2013) 73 (8_Supplement): 2354.
https://doi.org/10.1158/1538-7445.AM2013-2354
Published: 15 April 2013
View article titled, Abstract 2354: An E2F signature predicts benefit of adjuvant chemotherapy in early-stage non-small cell lung cancer.
Journal Articles

Abstract 2905: Validation techniques for PCA-based gene expression signatures.

Anders E. Berglund, Eric A. Welsh, David A. Fenstermacher, Steven A. Eschrich
Journal: Cancer Research
Cancer Res (2013) 73 (8_Supplement): 2905.
https://doi.org/10.1158/1538-7445.AM2013-2905
Published: 15 April 2013
View article titled, Abstract 2905: Validation techniques for PCA-based gene expression signatures.