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Journal Articles

Abstract 4912: Assessing transcriptomic profiles of visceral adipose tissue in colon cancer patients

Patricia A. Erickson, Victoria M. Bandera, Bettina Katalin Budai, Tengda Lin, Caroline Himbert, Sheetal Hardikar, Jeffrey T. Yap, Elaine M. Glenny, Aik Choon Tan, Jennifer Ose, Christy A. Warby, Olena Aksonova, Tobias Nonnenmacher, Chris Stubben, David Nix, Kenneth Boucher, Peter Schirmacher, Ildiko Strehli, Alejandro Sanchez, Jolanta Jedrzkiewicz, Lyen C. Huang, Jessica N. Cohan, Alexander Brobeil, Hans-Ulrich Kauczor, Christoph Kahlert, Victoria Damerell, Erin M. Siegel, Doratha A. Byrd, Adetunji T. Toriola, David Shibata, Christopher I. Li, Jane C. Figueiredo, Jatin Roper, Biljana Gigic, Stephen Hursting, Cornelia M. Ulrich
Journal: Cancer Research
Cancer Res (2025) 85 (8_Supplement_1): 4912.
https://doi.org/10.1158/1538-7445.AM2025-4912
Published: 21 April 2025
View articletitled, Abstract 4912: Assessing transcriptomic profiles of visceral adipose tissue in colon cancer patients
Journal Articles

Abstract 3726: Physical activity levels are associated with transcriptomic pathways in colon tumors and tumor-adjacent visceral adipose tissue: Results from the ColoCare Study

Victoria Maria Bandera, Caroline Himbert, Elaine M. Glenny, Tengda Lin, Sheetal Hardikar, Aik Choon Tan, Jennifer Ose, Victoria Damerell, Patricia Erickson, Richard Viskochil, Christy Warby, Olena Aksonova, Chris Stubben, David Nix, Kenneth Boucher, Peter Schirmacher, Ildiko Strehli, Alejandro Sanchez, Jolanta Jedrzkiewicz, Lyen C. Huang, Vaia Florou, Jessica N. Cohan, Alexander Brobeil, Hans-Ulrich Kauczor, Christoph Kahlert, Meghana Karchi, Elizabeth H. Wood, Doratha A. Byrd, Erin M. Siegel, Adetunji T. Toriola, David Shibata, Christopher I. Li, Jane C. Figueiredo, Biljana Gigic, Jatin Roper, Stephen D. Hursting, Cornelia M. Ulrich
Journal: Cancer Research
Cancer Res (2025) 85 (8_Supplement_1): 3726.
https://doi.org/10.1158/1538-7445.AM2025-3726
Published: 21 April 2025
View articletitled, Abstract 3726: Physical activity levels are associated with transcriptomic pathways in colon tumors and tumor-adjacent visceral adipose tissue: Results from the ColoCare Study
Journal Articles

Abstract C023: PDAC tumors from patients treated with combination MEK and autophagy inhibition reveal a treatment sensitive epithelial subtype that is enriched in murine models

Brian W Labadie, Aleksandar Z Obradovic, Sarah Sta Ana, Michael May, Naomi Sender, Isabelle V Ross, Monica Rodriguez-Mendez, Urszula Wasko, Lorenzo Tomassoni, Li Li, Manan Vij, Sinan Abuzaid, Julia Wulfkuhle, Winston Wong, Ilenia Pellicciotta, Benjamin Izar, Emanuel F Petricoin, Aik Choon Tan, Kenneth P Olive, Alex G Raufi, Gulam A Manji
Journal: Cancer Research
Cancer Res (2024) 84 (17_Supplement_2): C023.
https://doi.org/10.1158/1538-7445.PANCREATIC24-C023
Published: 15 September 2024
View articletitled, Abstract C023: PDAC tumors from patients treated with combination MEK and autophagy inhibition reveal a treatment sensitive epithelial subtype that is enriched in murine models
Journal Articles

Abstract 71: Differential infiltration of key immune cell populations across malignancies varying by immunogenic potential and likelihood of response to immunotherapy

Ahmad A. Tarhini, Islam Eljilany, Sam Coleman, Dale J. Hedges, Martin McCarter, John Carpten, Howard Colman, Abdul Rafeh Naqash, Igor Puzanov, Susanne Arnold, Michelle Churchman, Patrick Hwu, William S. Dalton, George J. Weiner, Aik Choon Tan, Jose R. Conejo-Garcia, Paulo C. Rodriguez
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 71.
https://doi.org/10.1158/1538-7445.AM2024-71
Published: 22 March 2024
View articletitled, Abstract 71: Differential infiltration of key immune cell populations across malignancies varying by immunogenic potential and likelihood of response to immunotherapy
Journal Articles

Abstract 3406: Transcriptomic analysis reveals differentially expressed pathways in colon tumors of cancer patients with vs without obesity: Results from the ColoCare Study

Victoria M. Bandera, Tengda Lin, Caroline Himbert, Elaine M. Glenny, Aik Choon Tan, Jennifer Ose, Christy Warby, Olena Aksonova, Alessandro Carpanese, Chris Stubben, David Nix, Kenneth Boucher, Peter Schirmacher, Ildiko Strehli, Jolanta Jedrzkiewicz, Lyen C. Huang, Jessica N. Cohan, Alexander Brobeil, Martin A. Schneider, Christoph Kahlert, Erin M. Siegel, Adetunji T. Toriola, David Shibata, Christopher I. Li, Jane C. Figueiredo, Biljana Gigic, Jatin Roper, Stephen Hursting, Cornelia M. Ulrich
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 3406.
https://doi.org/10.1158/1538-7445.AM2024-3406
Published: 22 March 2024
View articletitled, Abstract 3406: Transcriptomic analysis reveals differentially expressed pathways in colon tumors of cancer patients with vs without obesity: Results from the ColoCare Study
Journal Articles

Abstract 7615: Epithelial-mesenchymal-transition gene signature changes and poor oncological outcome in Candida-positive pancreatic ductal adenocarcinoma

Po Hien Ear, Min Hu, Jonathan S. Shilyansky, Naomi H. Fei, Sam Coleman, Rebecca Hoyd, Caroline E. Wheeler, Kelsey L. Steckly, Michelle L. Churchman, Nicholas Denko, Rebecca D. Dodd, Sheetal Hardikar, Ning Jin, Qin Ma, Martin D. McCarter, Abdul Rafeh Naqash, Afaf E. Osman, Gregory Riedlinger, Lary A. Robinson, Bryan P. Schneider, Eric A. Singer, Ahmad A. Tarhini, Gabriel Tinoco, Cornelia M. Ulrich, Yousef Zakharia, Daniel Spakowicz, Aik Choon Tan, Carlos H. Chan
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 7615.
https://doi.org/10.1158/1538-7445.AM2024-7615
Published: 22 March 2024
View articletitled, Abstract 7615: Epithelial-mesenchymal-transition gene signature changes and poor oncological outcome in Candida-positive pancreatic ductal adenocarcinoma
Journal Articles

Abstract 7349: Ligand-receptor signaling analysis and tumor-immune microenvironment deconvolution reveal differential adipose-tumor crosstalk in lean and obese colon cancer patients

Tengda Lin, Victoria M. Bandera, Elaine M. Glenny, Caroline Himbert, Jennifer Ose, Christy Warby, Olena Aksonova, Alessandro Carpanese, Chris Stubben, David Nix, Kenneth M. Boucher, Peter Schirmacher, Ildiko Strehli, Jolanta Jedrzkiewicz, Courtney L. Scaife, Bartley Pickron, Alexander Brobeil, Martin Schneider, Christoph Kahlert, Erin M. Siegel, Adetunji T. Toriola, David Shibata, Christopher I. Li, Jane C. Figueiredo, Jatin Roper, Biljana Gigic, Stephen D. Hursting, Cornelia M. Ulrich, Aik Choon Tan
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 7349.
https://doi.org/10.1158/1538-7445.AM2024-7349
Published: 22 March 2024
View articletitled, Abstract 7349: Ligand-receptor signaling analysis and tumor-immune microenvironment deconvolution reveal differential adipose-tumor crosstalk in lean and obese colon cancer patients
Journal Articles

Abstract 2190: Transcriptomic signatures of obesity-driven colon cancer: A multi-species transdisciplinary approach

Elaine M. Glenny, Tengda Lin, Victoria M. Bandera, Biljana Gigic, Aik Choon Tan, Babak Mirminachi, Saratchandra S. Khumukcham, Alessandro Carpanese, Christy A. Warby, Olena Aksonova, Caroline Himbert, Jennifer Ose, Chris Stubben, David Nix, Kenneth Boucher, Peter Schirmacher, Ildiko Strehli, Jolanta Jedrzkiewicz, Alexander Brobeil, Martin A. Schneider, Christoph Kahlert, Erin M. Siegel, Adetunji T. Toriola, David Shibata, Christopher I. Li, Jane C. Figueiredo, Jatin Roper, Cornelia M. Ulrich, Stephen D. Hursting
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 2190.
https://doi.org/10.1158/1538-7445.AM2024-2190
Published: 22 March 2024
View articletitled, Abstract 2190: Transcriptomic signatures of obesity-driven colon cancer: A multi-species transdisciplinary approach
Journal Articles

Abstract 3886: Analysis of clonal heterogeneity within paired primary and metastatic tumor samples of patients with solid tumors and implications for neoantigen-based personalized cancer vaccines

Alyssa Obermayer, Timothy Shaw, Darwin Chang, Joshua Davis, Jamie K. Teer, Xiaoqing Yu, Xuefeng Wang, Dale Hedges, Aik Choon Tan, Robert Rounbehler, Abdul Rafeh Naqash, Margaret Gatti-Mays, Aakrosh Ratan, Martin McCarter, Howard Colman, Igor Puzanov, Susanne Arnold, Michelle Churchman, Patrick Hwu, William Dalton, George Weiner, Jose Conejo-Garcia, Paulo C. Rodriguez, Bodour Salhia, Ahmad A. Tarhini
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 3886.
https://doi.org/10.1158/1538-7445.AM2024-3886
Published: 22 March 2024
View articletitled, Abstract 3886: Analysis of clonal heterogeneity within paired primary and metastatic tumor samples of patients with solid tumors and implications for neoantigen-based personalized cancer vaccines
Journal Articles

Abstract 5409: NuKit: a deep learning platform for histopathological Images

Ching-Nung Lin, Christine H. Chung, Aik Choon Tan
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 5409.
https://doi.org/10.1158/1538-7445.AM2023-5409
Published: 04 April 2023
View articletitled, Abstract 5409: NuKit: a deep learning platform for histopathological Images
Journal Articles

Abstract 5907: The tumor microbiome associates with features of the tumor microenvironment, treatment outcomes, and histologies: A national collaboration of the exORIEN Consortium

Rebecca Hoyd, Caroline E. Wheeler, Samuel Coleman, Louis Denko, Carlos Chan, Yousef Zakharia, Rebecca Dodd, Cornelia M. Ulrich, Sheetal Hardikar, Jennifer Ose, Michelle Churchman, Ahmad Tarhini, Lary A. Robinson, Eric Singer, Alexandra P. Ikeguchi, Martin McCarter, Kyra Anderson, John Carpten, Gabriel Tinoco, Marium Hussain, Nicolas Denko, YunZhou Liu, Ning Jin, Youngchul Kim, Asgeir Masson, Naomi Fei, Martin Benej, McKenzie Kreamer, Dennis Dennis Grencewicz, Ahmed Hussein, Aik Choon Tan, Daniel Spakowicz
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 5907.
https://doi.org/10.1158/1538-7445.AM2023-5907
Published: 04 April 2023
View articletitled, Abstract 5907: The tumor microbiome associates with features of the tumor microenvironment, treatment outcomes, and histologies: A national collaboration of the exORIEN Consortium
Journal Articles

Abstract 6574: Systematic analysis of the predictive gene expression signatures of immunotherapies across multiple cancer types using IOSig

Samuel Coleman, Caroline Wheeler, Rebecca Hoyd, Louis Denko, Ching-Nung Lin, Muhammad Z. Fadlullah, Siwen Hu-Lieskovan, Christine Chung, Ahmad A. Tarhini, Daniel Spakowicz, Aik Choon Tan
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 6574.
https://doi.org/10.1158/1538-7445.AM2023-6574
Published: 04 April 2023
View articletitled, Abstract 6574: Systematic analysis of the predictive gene expression signatures of immunotherapies across multiple cancer types using IOSig
Journal Articles

Abstract 5904: Intra-tumor microbes identified by RNAseq associated with response to immune checkpoint blockade in metastatic melanoma

Caroline E. Wheeler, Samuel Coleman, Rebecca Hoyd, Afaf Osman, Louis Denko, Aik Choon Tan, Daniel Spakowicz, Ahmad Tarhini
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 5904.
https://doi.org/10.1158/1538-7445.AM2023-5904
Published: 04 April 2023
View articletitled, Abstract 5904: Intra-tumor microbes identified by RNAseq associated with response to immune checkpoint blockade in metastatic melanoma
Journal Articles

Abstract 2144: Proteomic study reveals predictive biomarkers of immune-related adverse events in melanoma

Muhammad Zaki Fadlullah Wilmot, Magdalena Kovacsovics, Xuechen Wang, Samuel Coleman, John Marsiglio, Berit Gibson, Yoko DeRose, Qin Zhou, Annaleah Larson, John Hyngstrom, Ben Haaland, Siwen Hu-Lieskovan, Aik Choon Tan
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 2144.
https://doi.org/10.1158/1538-7445.AM2023-2144
Published: 04 April 2023
View articletitled, Abstract 2144: Proteomic study reveals predictive biomarkers of immune-related adverse events in melanoma
Journal Articles

Abstract 2522: Pathway and immune profile analysis of cyst-derived versus PanIN-derived pancreatic ductal adenocarcinomas

Margaret A. Park, Somashekar G. Krishna, Maria C. Genilo-Delgado, Kristyn Gumpper-Fedus, Darwin L. Conwell, Phil A. Hart, Mary E. Dillhoff, Maria F. Gomez, Toni L. Basinski, Aamir N. Dam, Jason B. Klapman, Jason B. Fleming, Mokenge Malafa, Amir Mohammadi, Barbara A. Centeno, Kun Jiang, Daniel Jeong, Dung-Tsa Chen, Mengyu Xie, Aik Choon Tan, Brooke L. Fridley, Jamie K. Teer, Zobeida Cruz-Monserrate, Jennifer B. Permuth
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 2522.
https://doi.org/10.1158/1538-7445.AM2022-2522
Published: 15 June 2022
View articletitled, Abstract 2522: Pathway and immune profile analysis of cyst-derived versus PanIN-derived pancreatic ductal adenocarcinomas
Journal Articles

Abstract PO-023: Spatial genomics coupled with machine learning to identify p53-driven molecular signatures that are predictive of lung adenocarcinoma progression

John H. Lockhart, Kyubum Lee, Hayley D. Ackerman, Mahmoud Abdulah, Andrew Davis, Nicole Montey, Theresa Boyle, James Saller, Aysenur Keske, Kay Hanggi, Olya Stringfield, Aik Choon Tan, Elsa R. Flores
Journal: Cancer Research
Cancer Res (2020) 80 (21_Supplement): PO-023.
https://doi.org/10.1158/1538-7445.TUMHET2020-PO-023
Published: 03 November 2020
View articletitled, Abstract PO-023: Spatial genomics coupled with machine learning to identify p53-driven molecular signatures that are predictive of lung adenocarcinoma progression
Journal Articles

Inhibiting Translation Elongation with SVC112 Suppresses Cancer Stem Cells and Inhibits Growth in Head and Neck Squamous Carcinoma

Stephen B. Keysar, Nathan Gomes, Bettina Miller, Brian C. Jackson, Phuong N. Le, J. Jason Morton, Julie Reisinger, Tugs-Saikhan Chimed, Karina E. Gomez, Cera Nieto, Barbara Frederick, Gijsbertus J. Pronk, Hilary L. Somerset, Aik-Choon Tan, Xiao-Jing Wang, David Raben, Tin Tin Su, Antonio Jimeno
Journal: Cancer Research
Cancer Res (2020) 80 (5): 1183–1198.
https://doi.org/10.1158/0008-5472.CAN-19-3232
Published: 02 March 2020
View articletitled, Inhibiting Translation Elongation with SVC112 Suppresses Cancer Stem Cells and Inhibits Growth in Head and Neck Squamous Carcinoma
Open the PDF for Inhibiting Translation Elongation with SVC112 Suppresses Cancer Stem Cells and Inhibits Growth in Head and Neck Squamous Carcinoma in another window
Includes: Supplementary data
Journal Articles

Abstract 5002: Investigating the role of NF- κB signaling and immune checkpoint blockade therapy in melanoma

Keith Wells, Jennifer Hintzsche, Carol M. Amato, Richard Tobin, Victoria Vorwald, Martin McCarter, Yiqun Shellman, Aik Choon Tan, William Robinson
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 5002.
https://doi.org/10.1158/1538-7445.AM2019-5002
Published: 01 July 2019
View articletitled, Abstract 5002: Investigating the role of NF- κB signaling and immune checkpoint blockade therapy in melanoma
Journal Articles

Abstract 4550: Correlations between tumor mutation burden, inflammatory profile and histological characteristics of tumor microenvironment in early-stage squamous cell lung carcinoma

Hui Yu, Daniel T. Merrick, Ming-Sound Tsao, William G. Richards, Lucian R. Chirieac, Mark A. Watson, Christopher J. Rivard, David H. Harpole, Raphael Bueno, Adrie van Bokhoven, Aik-Choon Tan, Fred R. Hirsch, Wilbur A. Franklin
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 4550.
https://doi.org/10.1158/1538-7445.AM2019-4550
Published: 01 July 2019
View articletitled, Abstract 4550: Correlations between tumor mutation burden, inflammatory profile and histological characteristics of tumor microenvironment in early-stage squamous cell lung carcinoma
Journal Articles

CDK1 Interacts with Sox2 and Promotes Tumor Initiation in Human Melanoma

Dinoop Ravindran Menon, Yuchun Luo, John J. Arcaroli, Sucai Liu, Lekha Nair KrishnanKutty, Douglas G. Osborne, Yang Li, Jenny Mae Samson, Stacey Bagby, Aik-Choon Tan, William A. Robinson, Wells A. Messersmith, Mayumi Fujita
Journal: Cancer Research
Cancer Res (2018) 78 (23): 6561–6574.
https://doi.org/10.1158/0008-5472.CAN-18-0330
Published: 03 December 2018
View articletitled, CDK1 Interacts with Sox2 and Promotes Tumor Initiation in Human Melanoma
Open the PDF for CDK1 Interacts with Sox2 and Promotes Tumor Initiation in Human Melanoma in another window
Includes: Supplementary data