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Adam C. Resnick
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Journal Articles

Abstract 4897: Personalized cell surface target identification from pan-cancer RNA-seq and proteomics profiling of tumors

Giacomo B. Marino, Eden Z. Deng, Daniel J.B. Clarke, Weiping Ma, Pei Wang, Adam C. Resnick, Avi Ma'ayan
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 4897.
https://doi.org/10.1158/1538-7445.AM2024-4897
Published: 22 March 2024
View article titled, Abstract 4897: Personalized cell surface target identification from pan-cancer RNA-seq and proteomics profiling of tumors
Journal Articles

Abstract 4889: Integrative multi-omic analysis reveals novel prognostic biological entities in pediatric medulloblastoma

Komal Rathi, Varun Kesherwani, Ammar S. Naqvi, Yuankun Zhu, Alex Sickler, Xiaoyan Huang, Bo Zhang, Brian Rood, Adam C. Resnick, Adam A. Kraya
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 4889.
https://doi.org/10.1158/1538-7445.AM2024-4889
Published: 22 March 2024
View article titled, Abstract 4889: Integrative multi-omic analysis reveals novel prognostic biological entities in pediatric medulloblastoma
Journal Articles

Abstract 3955: A proteogenomic study of high-grade glioma among adolescents and young adults

Nicole Tignor, Mateusz P. Koptyra, Shrabanti Chowdhury, Weiping Ma, Jo Lynne Rokita, Marina Gritsenko, Xiaoyu Song, Giacomo B. Marino, Eden Z. Deng, Francesca Petralia, Azra Krek, Dmitry Rykunov, Felipe da Veiga Leprevost, Noshad Hosseini, Komal S. Rathi, Yingwei Hu, Simona Migliozzi, Tomer Yaron, Weijia Fu, Bo Zhang, Yuankun Zhu, Miguel A. Brown, Jeffrey R. Whiteaker, Clinical Proteomics Tumor Analysis Consortium (CPTAC), Children’s Brain Tumor Network (CBTN), Mehdi Mesri, Ana I. Robles, Karin Rodland, Lewis C. Cantley, Antonio Iavarone, Kenneth Aldape, Marcin Cieślik, Alexey I. Nesvizhskii, Joseph E. Ippolito, Joshua B. Rubin, Amanda G. Paulovich, Hui Zhang, Avi Ma'ayan, Tao Liu, Phillip B. Storm, Adam C. Resnick, Brian R. Rood, Pei Wang
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 3955.
https://doi.org/10.1158/1538-7445.AM2024-3955
Published: 22 March 2024
View article titled, Abstract 3955: A proteogenomic study of high-grade glioma among adolescents and young adults
Journal Articles

Abstract 6372: Germline pathogenic variants are enriched in pediatric central nervous system tumor patients and associate with somatic functional consequences

Ryan J. Corbett, Rebecca Kaufman, Shelly W. McQuaid, Zalman Vaksman, Saksham Phul, Miguel A. Brown, Jennifer L. Mason, Heena Desai, Ryan Hausler, Ammar S. Naqvi, Antonia Chroni, Zhuangzhuang Geng, Bo Zhang, Chuwei Zhong, Yuankun Zhu, Allison P. Heath, Marilyn Li, Penn Medicine BioBank, Phillip B. Storm, Adam C. Resnick, Kara N. Maxwell, Miriam Bornhorst, Kristina A. Cole, Angela J. Waanders, Suzanne P. MacFarland, Jo Lynne Rokita, Sharon J. Diskin
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 6372.
https://doi.org/10.1158/1538-7445.AM2024-6372
Published: 22 March 2024
View article titled, Abstract 6372: Germline pathogenic variants are enriched in pediatric central nervous system tumor patients and associate with somatic functional consequences
Journal Articles

Abstract 5200: Multiparametric MRI along with machine learning informs on molecular underpinnings, prognosis, and treatment response in pediatric low grade glioma

Ali Nabavizadeh, Adam Kraya, Komal Rathi, Meen Chul Kim, Nastaran Khalili, Ariana Familiar, Varun Kesherwani, Hannah Anderson, Deep Gandhi, Aria Mahtabfar, Sina Bagheri, Xiaoyan Huang, Yuankun Zhu, Alexander Sickler, Saksham Phul, Sabine Mueller, Mateusz P Koptyra, Philip B Storm, Jeff Ware, Yuanquan Song, Michael J Fisher, Arastoo Vossough, Christos Davatzikos, Adam C Resnick, Anahita Fathi Kazerooni
Journal: Cancer Research
Cancer Res (2024) 84 (6_Supplement): 5200.
https://doi.org/10.1158/1538-7445.AM2024-5200
Published: 22 March 2024
View article titled, Abstract 5200: Multiparametric MRI along with machine learning informs on molecular underpinnings, prognosis, and treatment response in pediatric low grade glioma
Journal Articles

Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal

Ino de Bruijn, Ritika Kundra, Brooke Mastrogiacomo, Thinh Ngoc Tran, Luke Sikina, Tali Mazor, Xiang Li, Angelica Ochoa, Gaofei Zhao, Bryan Lai, Adam Abeshouse, Diana Baiceanu, Ersin Ciftci, Ugur Dogrusoz, Andrew Dufilie, Ziya Erkoc, Elena Garcia Lara, Zhaoyuan Fu, Benjamin Gross, Charles Haynes, Allison Heath, David Higgins, Prasanna Jagannathan, Karthik Kalletla, Priti Kumari, James Lindsay, Aaron Lisman, Bas Leenknegt, Pieter Lukasse, Divya Madela, Ramyasree Madupuri, Pim van Nierop, Oleguer Plantalech, Joyce Quach, Adam C. Resnick, Sander Y.A. Rodenburg, Baby A. Satravada, Fedde Schaeffer, Robert Sheridan, Jessica Singh, Rajat Sirohi, Selcuk Onur Sumer, Sjoerd van Hagen, Avery Wang, Manda Wilson, Hongxin Zhang, Kelsey Zhu, Nicole Rusk, Samantha Brown, Jessica A. Lavery, Katherine S. Panageas, Julia E. Rudolph, Michele L. LeNoue-Newton, Jeremy L. Warner, Xindi Guo, Haley Hunter-Zinck, Thomas V. Yu, Shirin Pilai, Chelsea Nichols, Stuart M. Gardos, John Philip, AACR Project GENIE BPC Core Team, AACR Project GENIE Consortium, Kenneth L. Kehl, Gregory J. Riely, Deborah Schrag, Jocelyn Lee, Michael V. Fiandalo, Shawn M. Sweeney, Trevor J. Pugh, Chris Sander, Ethan Cerami, Jianjiong Gao, Nikolaus Schultz
Journal: Cancer Research
Cancer Res (2023) 83 (23): 3861–3867.
https://doi.org/10.1158/0008-5472.CAN-23-0816
Published: 01 December 2023
View article titled, Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal
Open the PDF for Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal in another window
Includes: Supplementary data
Journal Articles

Abstract 3566: Expansion of the Pediatric Brain Tumor Atlas: Children's Brain Tumor Network, Kids First Data Resource and Childhood Cancer Data Initiative Open Science effort

Mateusz P. Koptyra, Komal Rahti, Yuankun Zhu, Bailey Farrow, Daniel Miller, Adam Kraya, Yiran Guo, Peter Madsen, Nicholas Van Kuren, Xiaoyan Huang, Miguel A. Brown, Jennifer L. Mason, Meen Chul Kim, Allison P. Heath, Brian M. Ennis, Bo Zhang, Jena V. Lilly, Jo Lynne Rokita, Christopher Friedman, Ximena P. Cuellar, Catherine A. Sullivan, Noel Coleman, Trang Duros, Thinh Q. Nguyen, Emmett C. Drake, Zeinab Helili, Beth A. Frenkel, Gerri R. Trooskin, Ariana Familiar, Karthik Viswanathan, Christopher M. Beck, Madison L. Hollawell, Valerie P. Baubet, Cassie Kline, Mariarita Santi, Tatiana S. Patton, Stephanie Stefankiewicz, Arya Kamnaa, Ryan A. Velasco, Dani Cardona, Phillip J. Storm, Adam C. Resnick, o/b/o Children's Brain Tumor Network
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 3566.
https://doi.org/10.1158/1538-7445.AM2023-3566
Published: 04 April 2023
View article titled, Abstract 3566: Expansion of the Pediatric Brain Tumor Atlas: Children's Brain Tumor Network, Kids First Data Resource and Childhood Cancer Data Initiative Open Science effort
Journal Articles

Abstract 6576: Gabriella Miller Kids First Data Resource Center (KFDRC): Empowering discovery across germline and somatic variation in pediatric cancer

David Higgins, Jean-Philippe Thibert, Michele Mattioni, Jack DiGiovanna, Robert L. Grossman, Bailey K. Farrow, Eric Wenger, Samuel Volchenboum, Robert J. Carroll, Melissa A. Haendel, Deanne M. Taylor, Yuankun Zhu, Vincent Ferretti, Adam C. Resnick, Allison P. Heath
Journal: Cancer Research
Cancer Res (2023) 83 (7_Supplement): 6576.
https://doi.org/10.1158/1538-7445.AM2023-6576
Published: 04 April 2023
View article titled, Abstract 6576: Gabriella Miller Kids First Data Resource Center (KFDRC): Empowering discovery across germline and somatic variation in pediatric cancer
Journal Articles

Abstract 2725: Molecular mechanisms of aberrant splicing in pediatric high grade gliomas

Ammar S. Naqvi, Brian Ennis, Run Jin, Karina L. Conkrite, Komal S. Rathi, Adam A. Kraya, Poonam Sonawane, Phillip B. Storm, Adam C. Resnick, Jo Lynne Rokita
Journal: Cancer Research
Cancer Res (2022) 82 (12_Supplement): 2725.
https://doi.org/10.1158/1538-7445.AM2022-2725
Published: 15 June 2022
View article titled, Abstract 2725: Molecular mechanisms of aberrant splicing in pediatric high grade gliomas
Journal Articles

Abstract 445: Integrated proteogenomic characterization across seven histological types of pediatric brain tumors

Francesca Petralia, Nicole Tignor, Boris Reva, Pichai Raman, Shrabanti Chowdhury, Dmitry Rykunov, Azra Krek, Weiping Ma, Jiayi Ji, Xiaoyu Song, Yuankun Zhu, Jo Lynne Rokita, Antonio Colaprico, Anna Calinawan, Jeffrey R. Whiteaker, Richard G. Ivey, Zeynep Gumus, Selim Kalayci, Gonzalo L. Garcia, Seungyeul Yoo, Lizabeth Katsnelson, Ying Wang, Jacob J. Kennedy, Uliana J. Voytovich, Lei Zhao, Felipe Leprevost, Hui-Yin Chang, Krutika S. Gaonkar, Elizabeth M. Appert, Ximena Cuellar, Jena Lilly, Jun Zhu, Eric E. Schadt, Medhi Mesri, Emily Boja, Tara Hiltka, Henry Rodriguez, Li Ding, Antonio Iavarone, Maciej Wiznerowicz, Alexey I. Nesvizhskii, David Fenyo, Steven Gygi, Amanda Paulovich, Adam C. Resnick, Phillip B. Storm, Brian Rood, Pei Wang, Children's Brain Tumor Tissue Consortium and Clinical Proteomic Tumor Analysis Consortium
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 445.
https://doi.org/10.1158/1538-7445.AM2020-445
Published: 15 August 2020
View article titled, Abstract 445: Integrated proteogenomic characterization across seven histological types of pediatric brain tumors
Journal Articles

Abstract 632: Novel BRAF gene fusions in pediatric histiocytic neoplasms respond differentially to RAF targeted therapies based on dimerization profiles

Payal Jain, Lea F. Surrey, Joshua Straka, Pierre Russo, Richard Womer, Marilyn Li, Phillip B. Storm, Angela J. Waanders, Michael Hogarty, Jennifer Picarsic, Adam C. Resnick
Journal: Cancer Research
Cancer Res (2020) 80 (16_Supplement): 632.
https://doi.org/10.1158/1538-7445.AM2020-632
Published: 15 August 2020
View article titled, Abstract 632: Novel <em>BRAF</em> gene fusions in pediatric histiocytic neoplasms respond differentially to RAF targeted therapies based on dimerization profiles
Journal Articles

Abstract A37: Unique gene fusions inform targeted therapeutic strategies across extremely rare, non-CNS pediatric solid tumors

Payal Jain, Lea F. Surrey, Joshua Straka, Tiffany Smith, Sudarshan Iyer, Elizabeth Fox, Monika Davare, Jennifer Picarsic, Marilyn Li, Angela J. Waanders, Adam C. Resnick
Journal: Cancer Research
Cancer Res (2020) 80 (14_Supplement): A37.
https://doi.org/10.1158/1538-7445.PEDCA19-A37
Published: 15 July 2020
View article titled, Abstract A37: Unique gene fusions inform targeted therapeutic strategies across extremely rare, non-CNS pediatric solid tumors
Journal Articles

Abstract PR06: The immunogenomic landscape of pediatric primary solid tumors

Arash Nabbi, Pengbo Sun, Sudhaman Sumedha, Kelsey Zhu, S.Y. Cindy Yang, Joseph N. Paulson, Marcel Kool, Komal Rathi, Karthik Kalletla, Pichai Raman, Yuankun Zhu, Adam C. Resnick, David T.W. Jones, Natalie Jäger, Stefan M. Pfister, Trevor J. Pugh
Journal: Cancer Research
Cancer Res (2020) 80 (14_Supplement): PR06.
https://doi.org/10.1158/1538-7445.PEDCA19-PR06
Published: 15 July 2020
View article titled, Abstract PR06: The immunogenomic landscape of pediatric primary solid tumors
Journal Articles

Abstract 3667: The Pediatric Brain Tumor Atlas - Transforming the landscape of research

Yuankun Zhu, Yiran Guo, Allison P. Heath, Pichai Raman, Elizabeth Appert, Jennifer Mason, Bo Zhang, Karthik Kalletla, Miguel A. Brown, Natasha Singh, Bailey K. Farrow, Parimala Killada, Meen Chul Kim, Alex Felmeister, Mateusz P. Koptyra, Sabine Mueller, Michael Prados, Jena V. Lilly, Rishi Lulla, Adam C. Resnick, Javad Nazarian, Phillip B. Storm, Angela J. Waanders
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 3667.
https://doi.org/10.1158/1538-7445.AM2019-3667
Published: 01 July 2019
View article titled, Abstract 3667: The Pediatric Brain Tumor Atlas - Transforming the landscape of research
Journal Articles

Abstract 3644: Novel NOTCH1-ROS1 gene fusion drives distinct molecular mechanisms in a rare pediatric angiosarcoma

Payal Jain, Sudarshan Iyer, Joshua Straka, Lea Surrey, Jennifer Pogoriler, Tiffany Smith, Christine Busch, Marilyn Li, Elizabeth Fox, Adam C. Resnick, Monika Davare, Angela J. Waanders
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 3644.
https://doi.org/10.1158/1538-7445.AM2019-3644
Published: 01 July 2019
View article titled, Abstract 3644: Novel NOTCH1-ROS1 gene fusion drives distinct molecular mechanisms in a rare pediatric angiosarcoma
Journal Articles

Abstract 2891: Landscape of infiltrating immune repertoire in pediatric solid tumors

Arash Nabbi, Natalie Jäger, Sumedha Sudhaman, Pengbo Sun, S. Y. Cindy Yang, Kelsey Zhu, Marcel Kool, Komal Rathi, Karthik Kalletla, Pichai Raman, Yuankun Zhu, Joseph N. Paulson, David T. Jones, Uri Tabori, Adam C. Resnick, Stefan M. Pfister, Trevor J. Pugh
Journal: Cancer Research
Cancer Res (2019) 79 (13_Supplement): 2891.
https://doi.org/10.1158/1538-7445.AM2019-2891
Published: 01 July 2019
View article titled, Abstract 2891: Landscape of infiltrating immune repertoire in pediatric solid tumors
Journal Articles

Intratumoral Genetic and Functional Heterogeneity in Pediatric Glioblastoma

Mary Hoffman, Aaron H. Gillmor, Daniel J. Kunz, Michael J. Johnston, Ana Nikolic, Kiran Narta, Mehdi Zarrei, Jennifer King, Katrina Ellestad, Ngoc Ha Dang, Florence M.G. Cavalli, Michelle M. Kushida, Fiona J. Coutinho, Yuankun Zhu, Betty Luu, Yussanne Ma, Andrew J. Mungall, Richard Moore, Marco A. Marra, Michael D. Taylor, Trevor J. Pugh, Peter B. Dirks, Douglas Strother, Lucie Lafay-Cousin, Adam C. Resnick, Stephen Scherer, Donna L. Senger, Benjamin D. Simons, Jennifer A. Chan, A. Sorana Morrissy, Marco Gallo
Journal: Cancer Research
Cancer Res (2019) 79 (9): 2111–2123.
https://doi.org/10.1158/0008-5472.CAN-18-3441
Published: 01 May 2019
View article titled, Intratumoral Genetic and Functional Heterogeneity in Pediatric Glioblastoma
Open the PDF for Intratumoral Genetic and Functional Heterogeneity in Pediatric Glioblastoma in another window
Includes: Supplementary data
Journal Articles

Dual HDAC and PI3K Inhibition Abrogates NFκB- and FOXM1-Mediated DNA Damage Response to Radiosensitize Pediatric High-Grade Gliomas

Sharmistha Pal, David Kozono, Xiaodong Yang, Wojciech Fendler, Whitney Fitts, Jing Ni, John A. Alberta, Jean Zhao, Kevin X. Liu, Jie Bian, Nathalene Truffaux, William A. Weiss, Adam C. Resnick, Pratiti Bandopadhayay, Keith L. Ligon, Steven G. DuBois, Sabine Mueller, Dipanjan Chowdhury, Daphne A. Haas-Kogan
Journal: Cancer Research
Cancer Res (2018) 78 (14): 4007–4021.
https://doi.org/10.1158/0008-5472.CAN-17-3691
Published: 15 July 2018
View article titled, Dual HDAC and PI3K Inhibition Abrogates NFκB- and FOXM1-Mediated DNA Damage Response to Radiosensitize Pediatric High-Grade Gliomas
Open the PDF for Dual HDAC and PI3K Inhibition Abrogates NFκB- and FOXM1-Mediated DNA Damage Response to Radiosensitize Pediatric High-Grade Gliomas in another window
Includes: Supplementary data
Journal Articles

Abstract LB-008: The Pediatric Brain Tumor Atlas: building an integrated, multi-platform data-rich ecosystem for collaborative discovery in the cloud

Adam C. Resnick, Phillip B. Storm, Angela J. Waanders, Jena V. Lilly, Rishi R. Lulla, Sabine Mueller, Michael Prados, Leonard S. Sender, Allison Heath, Alex S. Felmeister, Anthony Cros, Yuankun Zhu, Pichai Raman
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): LB-008.
https://doi.org/10.1158/1538-7445.AM2017-LB-008
Published: 01 July 2017
View article titled, Abstract LB-008: The Pediatric Brain Tumor Atlas: building an integrated, multi-platform data-rich ecosystem for collaborative discovery in the cloud
Journal Articles

Abstract 2593: Accelerating pediatric brain tumor research through team science solutions

Amanda Christini, Angela J. Waanders, Joost B. Wagenaar, Alex S. Felmeister, Mariarita Santi, Nitin R. Wadhwani, Jennifer L. Mason, Mateusz P. Koptyra, Jena V. Lilly, Jeffrey W. Pennington, Rishi R. Lulla, Adam C. Resnick
Journal: Cancer Research
Cancer Res (2017) 77 (13_Supplement): 2593.
https://doi.org/10.1158/1538-7445.AM2017-2593
Published: 01 July 2017
View article titled, Abstract 2593: Accelerating pediatric brain tumor research through team science solutions