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1 October 2017
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To determine how intratumor heterogeneity in the T-cell landscape correlates with the genomic landscape and with patient outcome in non–small cell lung cancer (NSCLC), Reuben and colleagues characterized the T-cell repertoire in a cohort of 11 patients with NSCLC who had previously been subject to whole-exome sequencing. T-cell receptor (TCR) sequencing profiled 45 tumor regions across the 11 tumors and revealed a high level of intratumor heterogeneity, with differences in T-cell density, clonality, and repertoire. TCR intratumor heterogeneity was linked to neoantigen heterogeneity and was correlated with disease relapse and reduced disease-fee survival in patients with NSCLC. These findings link T-cell repertoire heterogeneity to genomic intratumor heterogeneity and relapse in NSCLC. For details, please see the article by Reuben and colleagues on page 1088. - PDF Icon PDF LinkTable of Contents
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ISSN 2159-8274
EISSN 2159-8290
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Research Brief
TCR Repertoire Intratumor Heterogeneity in Localized Lung Adenocarcinomas: An Association with Predicted Neoantigen Heterogeneity and Postsurgical Recurrence
Alexandre Reuben; Rachel Gittelman; Jianjun Gao; Jiexin Zhang; Erik C. Yusko; Chang-Jiun Wu; Ryan Emerson; Jianhua Zhang; Christopher Tipton; Jun Li; Kelly Quek; Vancheswaran Gopalakrishnan; Runzhe Chen; Luis M. Vence; Tina Cascone; Marissa Vignali; Junya Fujimoto; Jaime Rodriguez-Canales; Edwin R. Parra; Latasha D. Little; Curtis Gumbs; Marie-Andrée Forget; Lorenzo Federico; Cara Haymaker; Carmen Behrens; Sharon Benzeno; Chantale Bernatchez; Boris Sepesi; Don L. Gibbons; Jennifer A. Wargo; William N. William, Jr; Stephen Swisher; John V. Heymach; Harlan Robins; J. Jack Lee; Padmanee Sharma; James P. Allison; P. Andrew Futreal; Ignacio I. Wistuba; Jianjun Zhang
Research Articles
Author Choice
Immune Escape in Breast Cancer During In Situ to Invasive Carcinoma Transition
Carlos R. Gil Del Alcazar; Sung Jin Huh; Muhammad B. Ekram; Anne Trinh; Lin L. Liu; Francisco Beca; Xiaoyuan Zi; Minsuk Kwak; Helga Bergholtz; Ying Su; Lina Ding; Hege G. Russnes; Andrea L. Richardson; Kirsten Babski; Elizabeth Min Hui Kim; Charles H. McDonnell, III; Jon Wagner; Ron Rowberry; Gordon J. Freeman; Deborah Dillon; Therese Sorlie; Lisa M. Coussens; Judy E. Garber; Rong Fan; Kristie Bobolis; D. Craig Allred; Joon Jeong; So Yeon Park; Franziska Michor; Kornelia Polyak
Author Choice
Whole-Genome and Epigenomic Landscapes of Etiologically Distinct Subtypes of Cholangiocarcinoma
Apinya Jusakul; Ioana Cutcutache; Chern Han Yong; Jing Quan Lim; Mi Ni Huang; Nisha Padmanabhan; Vishwa Nellore; Sarinya Kongpetch; Alvin Wei Tian Ng; Ley Moy Ng; Su Pin Choo; Swe Swe Myint; Raynoo Thanan; Sanjanaa Nagarajan; Weng Khong Lim; Cedric Chuan Young Ng; Arnoud Boot; Mo Liu; Choon Kiat Ong; Vikneswari Rajasegaran; Stefanus Lie; Alvin Soon Tiong Lim; Tse Hui Lim; Jing Tan; Jia Liang Loh; John R. McPherson; Narong Khuntikeo; Vajaraphongsa Bhudhisawasdi; Puangrat Yongvanit; Sopit Wongkham; Yasushi Totoki; Hiromi Nakamura; Yasuhito Arai; Satoshi Yamasaki; Pierce Kah-Hoe Chow; Alexander Yaw Fui Chung; London Lucien Peng Jin Ooi; Kiat Hon Lim; Simona Dima; Dan G. Duda; Irinel Popescu; Philippe Broet; Sen-Yung Hsieh; Ming-Chin Yu; Aldo Scarpa; Jiaming Lai; Di-Xian Luo; André Lopes Carvalho; André Luiz Vettore; Hyungjin Rhee; Young Nyun Park; Ludmil B. Alexandrov; Raluca Gordân; Steven G. Rozen; Tatsuhiro Shibata; Chawalit Pairojkul; Bin Tean Teh; Patrick Tan
Author Choice
Superenhancer Analysis Defines Novel Epigenomic Subtypes of Non-APL AML, Including an RARα Dependency Targetable by SY-1425, a Potent and Selective RARα Agonist
Michael R. McKeown; M. Ryan Corces; Matthew L. Eaton; Chris Fiore; Emily Lee; Jeremy T. Lopez; Mei Wei Chen; Darren Smith; Steven M. Chan; Julie L. Koenig; Kathryn Austgen; Matthew G. Guenther; David A. Orlando; Jakob Lovén; Christian C. Fritz; Ravindra Majeti
Author Choice
Loss of MutL Disrupts CHK2-Dependent Cell-Cycle Control through CDK4/6 to Promote Intrinsic Endocrine Therapy Resistance in Primary Breast Cancer
Svasti Haricharan; Nindo Punturi; Purba Singh; Kimberly R. Holloway; Meenakshi Anurag; Jacob Schmelz; Cheryl Schmidt; Jonathan T. Lei; Vera Suman; Kelly Hunt; John A. Olson, Jr; Jeremy Hoog; Shunqiang Li; Shixia Huang; Dean P. Edwards; Shyam M. Kavuri; Matthew N. Bainbridge; Cynthia X. Ma; Matthew J. Ellis
BLIMP1 Induces Transient Metastatic Heterogeneity in Pancreatic Cancer
Shin-Heng Chiou; Viviana I. Risca; Gordon X. Wang; Dian Yang; Barbara M. Grüner; Arwa S. Kathiria; Rosanna K. Ma; Dedeepya Vaka; Pauline Chu; Margaret Kozak; Laura Castellini; Edward E. Graves; Grace E. Kim; Philippe Mourrain; Albert C. Koong; Amato J. Giaccia; Monte M. Winslow
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